Cyanobacterium aponinum: Cyan10605_1427
Help
Entry
Cyan10605_1427 CDS
T02376
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
can
Cyanobacterium aponinum
Pathway
can03030
DNA replication
can03410
Base excision repair
can03420
Nucleotide excision repair
can03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
can00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Cyan10605_1427
03410 Base excision repair
Cyan10605_1427
03420 Nucleotide excision repair
Cyan10605_1427
03430 Mismatch repair
Cyan10605_1427
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
can03032
]
Cyan10605_1427
03400 DNA repair and recombination proteins [BR:
can03400
]
Cyan10605_1427
Enzymes [BR:
can01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Cyan10605_1427
DNA replication proteins [BR:
can03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Cyan10605_1427
DNA repair and recombination proteins [BR:
can03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Cyan10605_1427
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cyan10605_1427
MMR (mismatch excision repair)
DNA ligase
Cyan10605_1427
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Cyan10605_1427
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH
RNA_lig_T4_1
Hydrolase_6
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
AFZ53538
UniProt:
K9Z548
LinkDB
All DBs
Position
complement(1707475..1709490)
Genome browser
AA seq
671 aa
AA seq
DB search
MNNIPIEIITRIIDLKKQLQKASYAYYVLDNPIMEDSVYDQLYRELLTLENQYPSLITPD
SPTQRVGDKLSNQFSSIPHNIPLYSLDNAFNFAELKEWENRWQRQLNNVPEFAYVCELKI
DGSAIALTYENGILVRGLTRGDGVTGEDITNNLRTIRSIPLRLQIDNPPEVLEVRGEAFL
PLDEFTRINEEREKLGENLFANPRNATAGTLRQLDPNIVSARKLQFFAYNAHILPENNNL
DTQEQVLKYLTEIGFLVNPNYQVFNNLQAVKKYLDYWEKNRHNLPYMTDGVVIKINSFSL
QNQLGFTQKFPRWAIALKYPAEEVPTVVERIIVNVGRTGAVTPMAIMKPVQLAGTTVQRA
TLHNGDRVRELDIRVGDTVTIRKAGEIIPEVIEVLTELRPENTQPFQMPTHCPECNSPLV
KPEAEAILRCVNTSCPAILRGNLIHWASRDAMDIRGLGEKIIISLMEYRLVNSIADLYKL
TPFQLVDLDRMGEKLAQKLIQAIQESKKQPFARVLYGLGIRYVGQVNAKILAENFENIDN
LAKATQEELESVYGIGGEIANAVFLWFKVPENQKLISELQTLNFSLAIDTKNKQTNQQLF
NKTFVLTGTLPTLKREEAKQIIESAGGKVTSSISKKTDFVVVGEKAGSKLEKAQKLGIKT
ITEEDLLALVK
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgaacaatattcctatagaaattattactagaataatagatctaaaaaagcaattacaa
aaggctagttatgcttattatgtattagataatcccatcatggaagactctgtttatgat
caattatacagagaattattgaccctagaaaatcaatatcctagtctaataactcctgat
agtcctactcaaagagtgggagataaattaagcaatcaattcagttcaataccccataat
attcccctttatagtcttgataatgcttttaattttgcagaactaaaagagtgggaaaat
cgttggcaaagacaattaaataatgttccagaatttgcctatgtttgcgaattaaaaata
gatggatctgccatagctttaacctatgaaaatggtattttagtaagaggtttaacaagg
ggagatggagttacaggagaagatataaccaataatttacgaactattcgctctattcct
ttacgcctacaaatagataatcctcctgaagttttagaggtaagaggagaggctttttta
cccttagatgaatttactagaattaatgaggagcgagagaaattaggagaaaatttattt
gctaatcctcgtaatgcgacggcaggaacattgagacaattagatccaaatattgttagt
gccagaaagttacaatttttcgcttacaatgctcatattttacctgaaaataataaccta
gatactcaggagcaagtattaaaatatctaacagaaatcggctttttagttaatcctaac
tatcaagtttttaataacctacaagctgtaaaaaaatatcttgattattgggaaaaaaat
cgtcacaatttgccatatatgacggatggagttgtcattaaaataaattctttttcttta
caaaatcaactaggttttactcaaaaatttcctcgatgggcgatcgcacttaagtatccc
gccgaagaagttccgacagtggtagaaagaataatcgtcaacgttggacggacaggggca
gtaactcccatggcaataatgaagcctgtacagttagcaggtacaacagttcaaagagct
actttacataatggcgatcgagtgcgagaattagatattagagtgggggatactgtgact
attcgcaaagcaggagagattatccctgaagtaatagaggttttaacagaattaagacca
gaaaatactcaacccttccaaatgcctactcattgccctgagtgtaattcacccctcgtc
aaacctgaagccgaagcgatacttcgttgtgttaacacttcttgccccgccattcttcga
ggtaatctgattcattgggcttccagagatgctatggacataagaggtttaggagaaaaa
attattatctctttaatggaatatcgattagtaaattcgatcgcagatttatataaatta
actccatttcaattggttgacttagatagaatgggggaaaaattagcacaaaaactaata
caagctattcaagagagcaaaaaacaaccttttgctagggttttatatggtttaggaatc
cgttacgtagggcaagtaaatgcaaaaatcttggcagaaaattttgaaaacattgataat
ttagccaaggcaactcaagaagaattagaatctgtttatggcattggtggagaaatagca
aatgctgtatttttatggtttaaagtgccagaaaatcaaaaattaattagtgaactacaa
actctcaattttagtttagccatagatacaaaaaacaaacaaactaatcagcaattattt
aataaaacctttgttttaactggaacattaccaaccctaaaaagagaagaagcaaaacaa
attattgagtctgcggggggaaaagttactagcagtattagtaaaaaaactgactttgta
gtagtaggagaaaaagcaggttctaaattagaaaaagctcaaaaactaggaataaaaacc
ataacagaggaggatttactagctttagttaaataa
DBGET
integrated database retrieval system
