Clinocottus analis (woolly sculpin): 137788814
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Entry
137788814 CDS
T10471
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
cana Clinocottus analis (woolly sculpin)
Brite
Chromosome and associated proteins [BR:
cana03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
137788814 (smchd1)
DNA repair and recombination proteins [BR:
cana03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
137788814 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
137788814
NCBI-ProteinID:
XP_068438023
LinkDB
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Position
Unknown
AA seq
1972 aa
AA seq
DB search
MLFSMEQGRDRRMISVYDCRSENKEQSTKKQTLETSALDYNDFLRLLRRKFSIGPRETFV
LVTTDRIRLDFDKFEKLQDGSTIHLLLWEDQALAMATEEQINFVPHYDTLIQSGMYEYYT
SEGQTSLPYALAELIDNSLSATAKNTGMRTIEIRMVFDETLAKPTVIILDNGCGMTSKQL
KNWAVYRLSKFSRKDEEYVRPGPVRRSLNSDISFFGVGGKQAVFYIGNSTRIITKSVGSQ
DVHELVLSKEEFERKEREKEDVYSSVIKNRKPGDSSHVKKDQRCLNDLIAEECGKESFTA
VVITGVSPEHIAFLKKDFTVWTRQLANHYHYYIHGVNGKDINSVTNSNHLSKIDIQITLC
EKPPKLPRAMNLREVDDDMQTLYINAAVDTFEFTASPKDGGTVEGLIRYHPFLYDKETYP
KDPDALLDDDDDEDGYDNESGAWRQARGKSPIFDCFWNGRLIPYTKVQEFDWCAPTKTTK
DLTECYSRISGALFSDDTFKVTTNKLTFLDLEMTLKKKDTIFTRVVNSQSEQERSVKDSP
ARHPSESSCLNVLRKQRCNIQKELTQWLRNCHEKWDKQVKFLGYVETITRTDVPTKKMQH
PWATFSSIEWDGKVYKKGQLVKSQKTVPILYGRVVRFLLHGKYDDDVFATGGEVELVLEP
KALYDKIKIIAISKIDKNATDEAIKNYVDNDAAKLPELLIVDWPEGNPWPQNAVRPAGTQ
FGPLKVEIQNKKGESLSTMPSVGKKLLVELKVVQHSPKGDQELLCYVSHHLAKCGFWFKK
IETLTNKGKYTLSLTTKINEANAFGGRELPSFKLKFTINAGCAETFVVGEVSTTLHVGVP
FNIPLLVKDGYDHLATLPLDLKPVLKCSGLDVSYETVDNHGTTFTINGVKARGRVLNYQQ
SQTYDLKVTLPGLKIDTQTIKICLLPGNPHSLHVTPDDDLIPVANGNAVTFNVEIHDEAG
NITAHPKQIVCCKVEKFPSVATDCSATGARQLVTKQINLKIINGEPQNLKVKFEIPSQKK
IPLVEKQLKVLPSTRVSRMELCTNDNLVVTNNEKIDWLAGGSLENLFYKLYDEAGREVPP
TAKIASMIKINWSGDVNKEDLVQGKLPALLVPTQVQPALFFQVSYQDQNVSSSFYIVPRP
DEPKRLKATLDQNTVKLGQILSGNIKLELVDQYDNVTKTLTSSCERHIAVEAEPGLSKLS
FDWQESSCSFLVSGVRFQSGPLGPRELFFNYKSFVERVIVKVTAGVPAKLKLVPEPEKPL
QVLNDQGIDTPFVVQLLDEWGNRTTDQRVVVILSSSSPALKLTTSVTSQPVNAEGEASFT
VSSVSGPKGSYRLEFKGSLNMKPISGSTVNLTVIPDPNKPVSLSVEYTTSDVFQAGSVFP
VFSVTVVSDEGSPMTTFNPAAVSMSLWKGAPSGNAPPPTATELKCSKPRRNEKNDRFHFR
DKEIPEQVGKYTIQFFLRIGNGKVLSSKQIPINVEANQPIKLGPDSQPQTPVVSDSKAIA
NRTLVENMTLSIMDLFGNPAGQDLNGKLVVSMKNSSGDGNKKLPLFEGKTNSVTVRLIKG
KAHINRLVMMENSPGENGSTYILLFKPEVGIVPTPLAPFELPFHYSNDAENQRKMSELSV
KKNELITTISKSKVIFSTLQEILQLLTNQHLIASQKEQALRNDLISWNVYVYQGTPDVDR
LLKEKETEAYRILNTPRRVCSIRDAFKGQQDVLGMVGHLAFVENDDDARVISWHIRGDMD
CIITQTVAAATRIYEYTGGRQQVMPLENIFLPPGNRPMPHIRNGRMLFDPPGNPLFAKDL
LHFPLNQKSCVTAFKNILGDTILIDDLDSANNYRKAVVQSKQSCPTILTRKGDRVSAKGK
FGGAQNKAPPIGALQVFGAPIPQQYYTLKQHIDLLEKHRAALEKRDQAAKDREEHLSKIM
SSENRKRQEEMEENMKQLEEIERQLVSTPVRPVKRGLEGAGEPSSFVAKRAK
NT seq
5919 nt
NT seq
+upstream
nt +downstream
nt
atgttgttctccatggagcaaggaagagaccgcaggatgatcagtgtttacgactgccgc
tccgaaaataaggagcaaagtacgaagaaacaaacgctggaaacaagtgctttggactac
aatgactttcttcgacttctgcgacggaaattctcaatcggtccacgtgaaacatttgtg
ctagtcacaacggaccgaattcgcctggattttgataaatttgagaagcttcaggatggc
agcaccatccacttgttgctatgggaggaccaagctctggcaatggcaacggaggagcaa
atcaattttgtgcctcattatgatacgttgatccagagtggcatgtacgagtactacacc
agtgagggccagacatcactgccatacgcactggctgagctgattgacaactctctttcg
gccacagctaaaaacactggaatgaggacaatagagattcggatggtctttgatgaaact
cttgcaaaacctacagtgattatcttagataacgggtgcgggatgacctccaaacagctc
aaaaactgggcagtgtacagactctctaaattttccaggaaggatgaagagtacgttcgg
cctggtccggtccgtcgtagtctcaacagtgatatatccttctttggagtgggaggaaaa
caggctgttttctacatcggaaactcgaccaggatcatcactaaatcagttggctcccaa
gatgttcacgagctggttctgtcaaaagaggagtttgagagaaaagagcgtgagaaagaa
gatgtttacagcagtgtcattaaaaacaggaagcccggtgactcttcacatgtgaaaaaa
gaccagcgctgcctcaatgaccttatcgctgaggaatgtgggaaggaaagcttcacagcc
gtagtcatcacgggagtctcacctgagcatatcgcctttttgaaaaaagattttacagtg
tggaccaggcaactagctaaccattatcactattacattcatggagtcaatggaaaggac
attaatagcgttacaaactccaatcatctctctaaaatagacattcagatcactttgtgc
gagaagcctcccaagttaccccgtgcgatgaatctgagggaagttgacgacgacatgcag
actctgtacataaacgctgccgtcgacacgtttgagttcacagcctcccctaaagacggg
ggcacagtggagggactcattcggtatcatcccttcctctacgacaaggagacataccca
aaagacccggatgctctgctcgatgatgacgatgacgaagatggttacgataatgagtct
ggagcctggcgtcaggcaagagggaagagcccaatatttgactgtttctggaatggacga
cttataccatacaccaaagtgcaagagtttgactggtgcgctccgactaaaacaacaaag
gatcttactgagtgttacagtcggatttcaggagcgcttttcagtgacgacacattcaaa
gtcaccacgaacaagctcaccttcctcgacctggagatgacgctgaagaagaaggacacc
atcttcacgcgcgttgttaattcacagagtgagcaagaaagatcagtcaaagacagtcct
gctagacacccctctgaatcgagttgcttaaacgtgttgagaaaacaaagatgtaacatt
cagaaggaacttacgcagtggctgagaaactgccatgagaaatgggacaagcaagtcaag
ttcctgggctatgtggagaccataacacggacagatgttcccactaagaaaatgcagcat
ccctgggcgacgttctcttccatcgaatgggacggcaaagtgtacaaaaaaggccaactc
gtgaagtctcagaaaacggtgcccattctgtacggtcgtgtggttcgctttctgctgcac
gggaaatacgacgacgatgtctttgccacaggaggagaggttgaactggttctggaaccc
aaagccctttacgacaagataaagatcatagccatctctaagattgacaagaacgccacc
gatgaagccatcaagaactacgttgacaacgacgccgccaagcttccagagcttctgata
gtggactggccagaagggaatccctggccacagaatgctgttcgaccagctgggactcag
tttgggccgctcaaagtcgaaattcaaaacaagaagggagagtcgttatccacgatgcca
tcagtagggaaaaaactgcttgttgagctcaaagtcgtccagcacagtcctaaaggagat
caagagcttctctgttatgtttcccatcatttagcgaagtgtggtttctggttcaaaaaa
attgaaactctgaccaacaaggggaaatatacactgtccctaaccacgaagataaacgaa
gcgaatgcctttggaggccgagagcttccgagcttcaaactgaagttcaccatcaacgct
ggttgtgctgagaccttcgttgttggtgaagtgagcaccactcttcatgtcggggtgccg
ttcaacattcctctcctggtaaaagatggttatgaccacttagcgacgcttcctcttgat
ctcaaacctgtactgaagtgcagtggcctggatgtgagttacgagacggtggacaaccac
gggaccacgttcaccatcaacggggtcaaagcaagaggaagagtcctgaattaccaacaa
tcacagacgtatgacctgaaggtgaccctgcctggcctgaagatcgacacacagactatt
aagatctgtcttcttcctggtaatccacattccctccatgtgacgccagacgacgacctg
atcccagtagcaaacggaaacgctgtcacgtttaatgttgaaattcacgacgaggctgga
aacatcaccgctcatcccaaacagatcgtttgctgcaaggttgagaagtttccgtcagtg
gcgaccgactgcagcgccacaggagcgagacagctggtgacgaagcaaataaacctgaaa
ataatcaacggggaaccacaaaacctcaaagttaaatttgagattcctagtcaaaagaag
atcccgttggtggagaagcagctgaaggtgttgcccagcaccagggtgtcccgcatggag
ctctgcaccaatgacaatttggtggtgacgaacaacgagaagatagattggctggctgga
ggctcgctggagaacctgttctacaagctgtatgacgaggccggtcgagaggttcctccc
actgctaaaatcgcctccatgatcaagattaactggtcaggagatgtaaacaaagaggat
ttggtccaggggaagctgccggccttactggtgcccacgcaggtgcagccagcgctcttc
ttccaggtgtcctaccaagaccagaacgtgtccagctccttctacatcgtgcctcgtccg
gatgaaccaaaacggctcaaagcaactctcgaccaaaacacagtgaagctgggtcaaatc
ctttctggaaacattaagttggagcttgtggaccagtatgataatgtaaccaagacgctt
acctccagctgtgagaggcacatagctgtggaagctgagccgggtctgtcaaagctgagc
tttgactggcaggagagcagctgctcttttctggtatcgggggtgcggttccagtccggg
cctctcgggcccagagagttgttcttcaactacaaaagcttcgtggagcgcgtcatagtc
aaagtgacggctggagtccctgccaagcttaaactcgtccctgagccagagaagcctctg
caggtgctgaatgaccaaggcatcgacacaccgttcgtcgtccagctgcttgatgagtgg
gggaaccgaaccacggaccagcgggtcgtggtaatactgagctcttcatctccggcactg
aagctgacgacatctgtaacgtcacaacccgtgaacgcagagggggaagcttctttcact
gttagtagtgtgagcggaccaaaggggtcctatcggcttgagtttaaaggttccctcaac
atgaaacccatctctggttccacagtgaatctcactgtcatacctgaccccaacaagccc
gtcagcctgtcggtggagtatacaaccagcgacgtgtttcaagctgggagcgttttccca
gtcttctctgtgaccgtggtgtcggatgaaggaagcccgatgacgacttttaaccccgct
gccgtgtccatgagcctgtggaagggagcgccatcaggaaacgcgcctccaccaacggcc
accgagctgaagtgtagtaaaccaaggaggaatgaaaagaatgaccgttttcacttcaga
gataaagaaatcccagaacaagttggaaagtacaccatccagttttttctacgaataggc
aatggaaaagtcctgtccagcaagcagattcctataaatgtggaggccaatcaaccaatc
aaactgggacccgactcacagccacagaccccagttgtctctgacagcaaagccatcgcc
aaccgaaccctggtggagaatatgactctgagtataatggatttatttggaaacccagcg
ggacaggacctgaacgggaagctggtcgtttctatgaagaactccagtggcgacggcaac
aaaaagctccctctgtttgaaggcaaaaccaacagcgtgaccgtaagattgataaaagga
aaggcccacattaataggctcgttatgatggagaacagccccggcgagaatggaagtaca
tacatcctcctcttcaaacctgaagtgggaatagttcccacgcccctggcgccttttgag
ctccccttccattattccaatgatgcggagaatcaacgaaaaatgtctgagctgtccgtg
aagaaaaatgagctcattaccacaatttctaaaagcaaagtcatcttttctacattacaa
gaaatccttcagttgctgaccaatcagcacctgattgcaagtcaaaaagagcaagccctt
cgaaatgatctgatcagttggaacgtgtacgtttaccaagggaccccagatgttgacagg
ctcctaaaagaaaaggaaactgaagcctacaggatcctgaacacacccagaagagtctgc
tccatccgtgatgccttcaaggggcagcaggatgttttgggaatggtcggccacctggcc
tttgttgagaacgacgatgacgcgagggtcatctcctggcatatcaggggcgacatggat
tgcatcatcacccaaacagtcgcagcagcgacgaggatctacgaatacaccggcggccgg
cagcaggtcatgcccctggaaaatatttttctgcccccgggcaacagaccgatgccacac
ataagaaatggccgcatgctcttcgacccccctggaaacccgctcttcgccaaggacctc
ctgcatttccccctcaaccaaaagagctgtgtcactgctttcaaaaacatcctcggagac
actattctgattgatgacctggactcggcaaacaactaccgaaaggcggtggtgcagagt
aagcagtcgtgtcccaccatcctgacccggaagggcgaccgggtcagtgccaagggaaag
ttcggaggcgcacagaacaaagccccgcccatcggggcgttacaagtgttcggagccccg
atcccgcagcaatactacactttaaagcaacacatcgatctgctggagaagcaccgggca
gctctggagaagagggatcaggcagctaaagaccgggaggaacacttaagcaaaataatg
tcttctgaaaacaggaaaaggcaagaagaaatggaggagaacatgaaacaactggaggag
attgagagacaacttgtgtcaacaccagtcagaccagtgaaacggggtcttgaaggtgct
ggagagccgtccagcttcgtagcaaagagagcaaagtag
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integrated database retrieval system
