Clinocottus analis (woolly sculpin): 137794056
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Entry
137794056 CDS
T10471
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
cana Clinocottus analis (woolly sculpin)
Pathway
cana03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
137794056 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cana03400
]
137794056 (lig4)
Enzymes [BR:
cana01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
137794056 (lig4)
DNA repair and recombination proteins [BR:
cana03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
137794056 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
BRCT
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
137794056
NCBI-ProteinID:
XP_068446736
LinkDB
All DBs
Position
Unknown
AA seq
908 aa
AA seq
DB search
MEGTSKSDAAGQPFVAAQVPFLHLCNTLEKIQKSKLRPDKSKILKDFIESWRKFHSALHK
DDPKTTDSFYSAMRLIVPSFERERMAYGIKESMLAKLYIDVLGLPKNGPEANKLLNYRAP
TTSQGDAGDFAGMAYFVLKKRCASQGTLSIREVNDFLDSVAINNAGKQKDLVKKSLLHLI
TQSSALEQKWLIRMILKDMKLGISKETVLQVFHPDAAELYNVNTDLNKVCQQLHSPSVSL
SEVSIGLFSAFKPMLAGIANIRNVEKQMGNSLFYIQTKLDGERIQLHKDGDVYKYYTRNA
FEYTQQFGGSPLQGSLTPYIHNVFKGHVVNCILDGEMMAYNPTTETFMQKGSKFDIKRLM
DDSELQTCFCVFDVLLVNGQKLGRETLKKRYETLQTVFTPVTGRMHLVPKTDARTVQEVV
NALNDAIDGREEGIMVKDPMSIYKPDKRGEGWLKIKPEYVDGLMDELDLLILGGYWGKGR
RGGMMSHFLCGVAEAPKPGEKPSVFHTLCRIGSGYTMKELYDLGLKLAKHWKVYRKNDPP
ASISCATEKPEVYIEPCNSVIIQVKAAEIVGSDMYKTNCTLRFPRIEKIREDKEWHQCMT
LAELDQFRGRASGKLASRHLRIDGDEPQKKKRKLPAKAKKLVEVVDHFKPQDLSGVTKET
DMFEDVEFCILNGTEAHPKAELEKGVARCGGVVVQNPARDTYCVIAGVENMRVKNLVSSD
RHDVVWAAWLLDCLHQKEVVPWQPRHMIHMSPSTREHFAKEYDGYGDSYFADTDERQLRE
VFGRMGDTDLDVDAGRVEQRYGWEDLPTSMFRPFQVYMDGYADIGEPESAIAATCLDIRA
LEFRYHGGTVTPALEEGVSHVVIAEETRLLCLRTLRRSFRKKFKIVSDSWVTDSIRAGHL
MDDTDYLV
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atggaggggacttccaagagtgatgctgccggtcagccctttgttgctgctcaggttcct
ttccttcacctttgcaacactttagagaagatccagaagtctaaactccgaccagataaa
tccaagattctcaaggatttcatagagtcatggaggaagtttcactctgccctccacaaa
gacgaccccaaaacgaccgactcgttctactccgcgatgcgcctcatcgtcccgtccttc
gaacgagagcgaatggcgtatggcatcaaagagagcatgttggctaaactctatatcgac
gtgctgggcctcccaaagaacggcccggaagccaacaaactgttgaactaccgcgctccg
actacatcccaaggagatgctggagactttgccggcatggcgtactttgtgctgaagaaa
cggtgtgccagccaaggaacccttagcataagagaagtcaatgacttcctggactcggtg
gccatcaacaacgcgggcaagcagaaggatctcgtgaagaagagcctgctgcacctcatc
acccagagctcggctctcgagcaaaaatggctcatccggatgatcctgaaggacatgaag
ctcgggatcagcaaggaaacggtcctgcaggtcttccacccggatgcggccgagctctac
aacgtcaacacggacttgaacaaggtgtgccagcagctccacagcccctccgtgtcctta
agcgaagtctccatcgggctcttctccgctttcaagccgatgttggcgggtatcgcgaac
atccgcaacgtggagaaacagatgggaaacagccttttttacattcagaccaagctggac
ggcgagcgcatacagctgcacaaagacggagacgtgtacaagtactacactagaaacgct
tttgaatacacccagcagttcggcgggtccccgctgcagggctccctgacgccttacatc
cacaacgtcttcaaaggccacgtcgtcaactgcatcctcgacggcgagatgatggcgtac
aacccgaccacggagaccttcatgcagaaagggagcaagttcgacatcaagagactcatg
gacgactctgagctgcagacgtgcttctgcgtgtttgacgtgctgctggtcaatggccag
aagctcggcagggagacgctgaagaagcgctacgagacccttcagacggttttcacacca
gtcacggggcggatgcacctggtgccaaagaccgacgccaggaccgtgcaggaggtggtg
aacgccctgaacgacgccattgacggccgagaggaggggatcatggtgaaggatcccatg
tccatctacaaacctgacaagcgcggggagggatggctgaaaataaagcctgaatacgtg
gacggcttgatggatgagctcgacctgctgattctcggcggctactgggggaaagggagg
cggggcggcatgatgtctcatttcttatgtggcgtcgccgaagctccgaagcccggcgag
aaaccctccgtcttccacaccctctgccgcatcggctccggctacaccatgaaggagttg
tacgacctcggactaaagctggccaagcactggaaagtctatcggaagaatgacccgccg
gcatccatctcgtgcgcaacagagaagccagaggtctacatcgagccctgcaactcggtc
atcatccaggtcaaggcggccgaaatagtcggcagcgacatgtataaaaccaactgcacc
ctgcgcttccccaggatcgagaagatccgcgaggacaaggagtggcaccagtgcatgacc
ctggcagagctggatcagttccgcggccgggcgtccgggaagctcgcctcgcggcacctt
cgcatcgacggcgacgaaccgcagaagaagaagcgcaagctgccggccaaagctaagaag
ctggtcgaggtcgtcgaccacttcaagccccaggacctctccggcgtcaccaaggagacg
gatatgtttgaggacgtggagttctgtatcctgaacggcacggaggctcaccccaaggcg
gagctggaaaagggcgtggccaggtgtggcggcgtcgtggttcaaaacccggcacgggac
acctactgcgtgattgccggcgtggagaacatgcgcgtgaagaacctggtctcgtccgac
cggcacgacgtggtgtgggccgcctggctgctggactgcctgcaccagaaggaagtggtc
ccgtggcaaccgcgccacatgatccacatgtcgccctccaccagggagcacttcgccaag
gagtacgacggctacggcgacagctacttcgcggacacggacgagcggcagctgagggag
gtgttcgggcggatgggcgacaccgacctggacgtggacgccggccgggtggagcagcgg
tacggctgggaggaccttcccaccagcatgttcagacccttccaggtttacatggacggc
tacgccgacataggtgagcctgaaagcgccatagctgccacctgtttggacatcagggct
ctggagtttcgctaccacgggggtacggtgacgccggcgttagaggaaggggtctctcac
gtcgttatcgcagaggagaccagacttctctgtttgaggactctgagacgcagctttagg
aagaaatttaagattgtaagcgactcatgggtgacggattcaatcagagcaggacacctg
atggatgacaccgactacttagtctga
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integrated database retrieval system
