Capsicum annuum (peppers): 107856564
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Entry
107856564 CDS
T04646
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
107856564
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cann03400
]
107856564
Enzymes [BR:
cann01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
107856564
DNA repair and recombination proteins [BR:
cann03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
107856564
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
PTCB-BRCT
BRCT
RNA_ligase
CofC
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
107856564
NCBI-ProteinID:
XP_047258339
LinkDB
All DBs
Position
Unknown
AA seq
1091 aa
AA seq
DB search
MATSAVDGGVGGEDIKFSVMVSLFQWIQKSKSSKQKRSKFRKFLDAFCRKPQDNFAAMRL
ILPVLDRERGSYGLKEHVLATCLIDALAMSRDSDDARRLLNWRKGGPKTGSNAGNFSLVA
AEVLQRRQGMASAGLTIKELNDFLDHLASSENRTEKISILSDLIRKTNAQEMKWIIMIIL
KDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLLCEKLRDRSQRHKRQDIEIGKPVRPQLA
LRVSNASAAWKKLHGKEVVVECKFDGDRIQIHKNNSELNFFSRNFLDHQEYAHGMSDVIT
QNILADKCILDGEMLVWDASINRFAEFGSNQEIAKAAREGLDSDRQLCYVAFDILYFGDT
SVIHRSLKERQEILRKVVKPITGRLEILVPDGGLNAHRLSGEQCWSIIARSVDDVDKFFT
DTVENRDEGIVLKDLTSKWEPSDRSGKWLKLKPDYVRAGSDLDVLIIGGYYGSGRHGGEV
AQFLVGLAEPMAPNTYPRRFISFCRVGTGVSDEERNTIVTRLKPYFRNYDYPKQAPPTFY
QVTNNAKERPDVWIESPEKSIIVSITSDIRTIRSEVFAAPYSLRFPRIDRVRYDKPWHEC
LDVQSFVDLVHSTNGTTQREADRGVMHDHEPKTIRSSKRREKKNVSAVPSHFIQTDVSQI
KGETSMFSDMVFYFANVPPSHTLESLHKMVVEHGGSFSMNLNKSVTHCIASESRGIKFQA
AKLHGDVIQCSWIFDCCLQKKLLPLQPKYFLFLSDSTKKKMEAEVDEYSDSFYSDLSIEE
IEQLLSNIEHSEDSKTVEYYKNKYCAKDRWARFHGCCIYFFIPKQYLKYSDCKALVEIAM
RRMKVEISVGGGKVGDSIFHATHVVVMSLPEFNVNFNEMLSSFSEAEKHVLYNTSLHVVR
ARWLEDSFKEDQKLLEEDYCLKPTNFQQSISEKRHDKLKGNSGKCERPSSPDKDGVQIKA
EGISDRCRAITLRKRDRKQDRGRPTGSATEKTKVGINMPRRVKRKVTSSRAKIHENESDE
GATSGEHLHNDESEAAVETRGSHETFAEHSSGIQNENVVQDLELSPDGETIPQRTAECSV
IGERLDKAQET
NT seq
3276 nt
NT seq
+upstream
nt +downstream
nt
atggcgacttccgccgtagacggtggtgttggaggagaagacataaaatttagcgtgatg
gtcagccttttccagtggatacagaagagtaaatcatcaaagcagaagcggtccaagttc
cgcaagtttctagacgccttctgcaggaagcctcaggacaattttgctgccatgcgcctc
attctccctgtcctcgaccgtgagcgtggctcttatggcctcaaggagcacgttcttgct
acttgcctcattgacgcacttgccatgtcccgcgattccgatgatgcccgccgtctcctc
aactggaggaaaggcggccccaaaactggctcaaatgccggaaacttctctcttgttgcc
gctgaggtcctccagcgcagacagggaatggcttctgctgggctgacaattaaggaacta
aatgacttccttgatcacttggcgtcaagtgaaaacagaacagagaagatttcaattctg
tctgatctaatcaggaaaacaaatgctcaagaaatgaaatggattataatgataattctc
aaagatcttaagttgggaattagtgaaaagagcatcttccacgaattccatccagatgca
gaggacttattcaatgtcacatgcgatttaaaactactttgtgaaaagttgagggacaga
agtcaacggcataaacgccaggacattgaaattggaaaacctgtccgccctcagctggct
cttagggtcagcaatgcatctgctgcgtggaaaaagcttcatgggaaagaagtagttgtt
gagtgcaaatttgacggcgatcgcatccagattcacaaaaataattctgagctaaacttc
ttctcaagaaactttcttgatcatcaagagtatgctcatggaatgtcagatgttattaca
cagaatattcttgctgacaagtgcatactcgatggtgaaatgttggtttgggatgcatca
ataaaccgctttgcagagtttggttccaatcaagaaatagcaaaggcggcaagagagggt
cttgacagtgataggcagttgtgttatgttgcattcgatattctttattttggcgatacc
agtgttattcatcggagcttgaaggagcgtcaagagattctccggaaagttgtgaagccc
ataacaggccgtttagaaattttggtccctgacggtggtcttaatgctcatcgtctttct
ggggagcaatgttggtcgatcattgctcgaagtgttgacgatgttgataaattctttaca
gatactgttgagaacagagatgaaggaattgttttgaaagatttaacttcaaaatgggaa
ccaagtgatcggagtggaaaatggctaaagttgaagcctgattatgttcgagctggctct
gatttggatgttcttattatcggaggctactatggttctggccgacatggaggagaagta
gctcaatttctggtgggtcttgctgagccaatggctccaaatacgtatcccaggaggttc
atttctttttgcagagtgggcactggagtttctgatgaggaacgtaataccatagtaact
cgattaaagccctatttcaggaattatgattacccgaagcaggcaccaccaactttttat
caagtaacaaataatgcaaaagagagaccagacgtgtggattgaaagtccagagaaatcc
atcattgtttcaattacaagtgatattagaacaataagatctgaggtgtttgctgctcca
tacagcttgagatttccgcgtattgatcgagtcagatatgacaagccttggcatgagtgt
cttgatgtgcaatcatttgttgacctggtacattcaaccaatggtaccacacagagggag
gccgatcgtggggttatgcatgatcatgagccaaagaccattaggtcgtcaaaaagacga
gagaagaagaatgtttctgcagttccttctcatttcattcagactgacgtgtctcaaatc
aagggtgaaacatcaatgttctctgacatggtgttttattttgctaatgtgcctccgtca
catacactcgaatccttgcacaaaatggtggtcgagcatgggggttctttctccatgaat
ttgaataagtcagttactcattgtatagcatctgaaagtagaggtatcaagtttcaagct
gcaaaacttcatggagatgttattcaatgctcttggatctttgactgctgtctgcaaaag
aagctccttcctttacagccaaagtattttcttttcctttctgattcaacaaagaaaaaa
atggaagcagaagtggatgaatattctgattctttctactctgacctcagcattgaagaa
attgaacagcttttgagcaatatagaacactccgaagactctaaaactgttgagtactac
aagaataagtactgtgccaaggatagatgggctagatttcatggttgctgcatttacttt
ttcattccaaagcagtatctgaaatattcagattgcaaggctttagtggaaattgctatg
agaaggatgaaagttgaaatttctgtgggtggtgggaaagttggtgacagtatttttcat
gctacccatgtcgtcgtcatgtctctaccggagtttaacgtaaatttcaatgaaatgttg
agtagtttctcagaggcagagaagcatgttttgtacaatacaagtctgcatgtagtcaga
gcacggtggttggaggattcctttaaagaggaccagaagttgcttgaggaggattattgc
ctaaagcctaccaattttcaacagtcaatctctgagaagagacatgataagctaaaaggt
aattccggaaagtgcgaaagaccatcttcccctgataaagatggagtacaaatcaaagca
gaaggaatatcagaccgttgtcgggccatcacgctacgaaagagagacaggaaacaagat
agaggaagacctacaggtagtgctacagaaaaaacgaaagttgggatcaacatgccacgg
agagttaaacgcaaggtcacaagtagtcgtgctaagattcatgaaaatgaatctgatgaa
ggtgctacttcaggtgaacatcttcataatgatgagagtgaagctgctgttgagactcgt
ggtagccatgaaacttttgcagagcatagctcaggaattcagaatgagaatgtcgtacaa
gatctggaattgtcaccagatggtgaaacaattccacaaaggactgctgagtgcagtgtg
atcggtgaaagattggacaaagctcaggaaacttaa
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integrated database retrieval system
