KEGG   Capsicum annuum (peppers): 107866119
Entry
107866119         CDS       T04646                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1 isoform X1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
cann  Capsicum annuum (peppers)
Pathway
cann03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cann00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    107866119
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cann03021]
    107866119
Enzymes [BR:cann01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     107866119
Transcription machinery [BR:cann03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     107866119
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5 RNA_pol_Rpb1_1 RNA_pol_Rpb1_4 RNA_pol_Rpb1_7
Other DBs
NCBI-GeneID: 107866119
NCBI-ProteinID: XP_016567789
LinkDB
Position
1:6265829..6289794
AA seq 1450 aa
MELDRNIEQQVPEGILKGINFSILTETDAVKLAAKVIGAVNEVTDPALGFPNPIFQCSTC
GASDGKKCEGHFGLIKFPYTILNPYFVSEVAQILKKVCPGCKSLRRDKVKGADKTSACKY
CDQGTLGYPPTKFKVSPKDMFGKTAIIAEVNENALKKQREITGVSLASDYWDFIPHDAQQ
DASLSSSNYKRVLSHAQVYSILKDVDPGFLEGLLKRKNSIFMQNCLLTPNCHRVTEFGQH
MIFDESNRLYRKLIDFRGTANDLSVCVFDRIKVSKIRAERSIINDPAAPATGLKYVKELV
LAKRTNHAFRMVVVGDPNIELGEIGIPCHVAENLHMAEPLSSRNWEKMTDLCDLMILQKG
GILVRRKGVLIRVSVMDQLQRGDVIHRPLVDGDVVLINRPPSIHQHSLIALSVRILPVNS
VLSINPLVCSPFRGDFDGDSLHGYVPQSIDSRIELSELVALNQQLIDGQNGQNLLSLSHD
SLTAANLILEPTVFLDRVQMQQLQMFCPRQMGMNAIIRAPSGKSYWTGKQLFSLLLPSDL
EYVFPSNGVCISEGEILTSSSGSSWLRDASENLFYSLVKHHGGDTLDLLYAAQAVLGEWL
SMRGLSVSLSDLYISSDLFSRENMIDEVISGLQEAERLSYIQLLMVKYNKDFLAGNLEES
KNSMGFDLEFMSIMQQKSASLSQASATAFKHVFRNTQNLVYNYASNDNSFLAMLKGGSKG
NLLKLVQHSMCLGLQQSLVPLSFRIPRQLSCDGWNSHRTNLVFEKAHKVPECPGPYIPCA
VVESSFLAGLNPLECFVHSLISRDSSFSGHADVSGTLNRKLMFFMRDLYVGYDGTVRNAY
GNQIVQFSYNEADQISCTTGTGETVESHNHATHAIGGHPVGSLAACAISEAAYSALDQPV
SALESSPLLNLKKILESGVGSRSGEKTASLFLSESLERWAHGFEYGALEVKGHLERLLLS
DVVSTVMICYSPETCKSPHSPWVCYFHIDKENVKTRRLKMRSVVDALNMRYRAAKPTKPK
AGTDLPDLRITCKDCSVAEGGNKKSKICITVSAVETSKNSLSLRDTLRDLVIPFLLRTVI
KGFSAFKKVDILWRELPSPLKSSRSSTSPGELYLQVFMSESCDRIKFWNALVDSCLQIRD
LIDWERSYPDDVHDLTVAYGLDVAWESFLCKLHSAVSETGKKILPEHLVLVADCLTATGE
FAPLSAKGLSMQRKAAGVVSPFMQACFSNPGDSFVRAAKMRLSDDLQGSLESLAWGKTPS
IGTGSSFDLMFSAKGYQPAKPMDVYARLSSHVTADKPKVMVTPDDDIEMDGKSLARRLYK
LDDLNKKSCKSQWAIAKLRSLLSFNDIKKLSQSLKQMLSKYAIDGELSEADKSIVMMALQ
FHPRRNEKIGTGAQEIKIGYHKEYEDSRCFMLVRPDGTVEDFSYRKCMQHALELIAPQKA
KTSKWLNGIS
NT seq 4353 nt   +upstreamnt  +downstreamnt
atggagcttgatcggaatattgagcagcaagtgccagaaggtattctgaagggcataaat
ttcagtatcttaacggagactgatgcggtcaaattggcagctaaggtaattggagcagtt
aatgaagtaacagatcctgcattagggtttccaaatccgatctttcagtgctccacatgt
ggtgcaagcgatgggaaaaaatgtgaaggtcattttggattaataaaatttccatataca
attctgaatccgtatttcgtatcggaggttgctcagatcctgaagaaagtatgtccagga
tgtaaatctttgcgtcgtgataaggtcaagggtgctgataagacatctgcctgcaaatac
tgtgatcagggaactctaggttatcctccaacgaaatttaaagtgtctcctaaagacatg
tttgggaagactgccattatcgctgaagtgaatgaaaatgcgttaaagaagcaacgggaa
attactggagtaagtttggcttctgactattgggatttcattccacatgatgcacagcaa
gatgcaagtttaagttcctccaattacaaaagagttttatcacatgctcaggtatatagc
attctgaaagatgttgatccagggtttcttgaaggacttctcaaaagaaagaattctatc
ttcatgcaaaactgtcttttgactcctaattgtcaccgtgtcacagaatttggacagcac
atgatatttgatgaaagtaataggctttacagaaagctgattgacttcagagggacagca
aatgacttgagcgtgtgtgttttcgatcgaattaaagtttccaagatacgtgcagagaga
tcgataataaacgatcctgctgcccctgctactggtttgaagtatgtgaaagagttggtt
ctggcaaaacgcacaaatcatgctttccgcatggttgtggttggtgatcctaacatagag
ttaggtgaaattggtattccatgtcatgttgcagagaatctccatatggccgaacctcta
agttcacggaattgggaaaagatgactgatctctgtgatcttatgattcttcagaaggga
gggattctcgtccgtagaaagggtgtcttaattcgtgttagtgtaatggaccagttgcag
agaggggatgttatacatagacctcttgttgatggagatgttgtgttgataaatcgacct
ccttctatccatcaacattcactaattgctctgtctgttaggattcttccagtaaattct
gttctttcaatcaatcctcttgtctgttctccattccgtggggattttgatggcgattcc
cttcatggttatgttccccaatcaatcgattctaggattgagcttagtgagcttgttgct
ctgaatcagcagttaattgacggacagaatggtcaaaatcttctttcattgagtcatgat
agcttaactgctgctaatttaattttggagcctacagttttcttggaccgcgtccagatg
cagcagctacaaatgttttgtcctcgtcagatgggtatgaatgctatcataagagcacca
tcaggaaagagttattggactgggaaacaattattcagcttgcttttgccatcagacctt
gaatatgtttttccatcaaatggagtttgtattagtgagggggaaattttgacatcttct
agtgggtcttcttggctgcgtgatgccagtgaaaatcttttttatagtcttgttaaacac
catggaggtgacactcttgaccttctttatgctgcacaagcagttcttggcgagtggttg
tccatgaggggacttagtgtttcactgtccgatctttacatatcttctgatctattttcc
cgtgaaaatatgattgatgaagtcatttctggtttgcaagaggcagaacgactgtcttat
atccaactgctgatggtaaagtataataaggatttccttgctggaaacttagaagaaagc
aagaactccatgggttttgatttggagtttatgtctatcatgcagcagaaatcagcttcc
ctgagtcaagcttctgctactgctttcaagcatgttttccggaatacccagaatttggtg
tataattatgcaagcaatgataattcatttctggctatgttaaaaggtggcagtaagggc
aacctgctaaaactggtccaacacagcatgtgccttggattgcagcagtctctggttcca
ttatcatttagaataccccgccaactttcttgtgatggatggaatagtcatagaacaaat
cttgtttttgagaaagcacataaggttcctgaatgtcctggtccttacattccgtgtgcc
gtggttgaaagttcttttcttgcgggtttgaatcctcttgagtgttttgtgcattcatta
attagccgtgatagttcttttagtggacatgctgatgtttctggaactttgaaccgcaag
cttatgtttttcatgcgtgatctgtacgttggatatgatggaacagtgaggaatgcttat
gggaatcaaattgtgcagttctcttacaatgaagcggaccaaatttcttgtactacgggc
actggtgaaacagtagaaagtcataaccatgctactcatgcaattggtggtcatcctgtt
ggttcattggcggcctgtgccatttcagaagctgcatacagtgctttggatcaacctgtc
agtgcacttgagtcatcgcctttactaaacctgaagaaaatattagaatctggagtaggg
agtcgtagtggcgagaaaactgcatcgctgtttctttcagaaagtcttgagagatgggct
catggttttgaatatggggctttagaggtcaagggtcatctggaaaggcttcttctttca
gatgttgtttctacagtaatgatatgctactcccccgaaacatgtaaaagccctcacagt
ccctgggtctgttattttcatatagataaggaaaatgtgaagacgagaaggctgaaaatg
agatcagttgtagatgctcttaacatgagatatagagccgcaaaaccgacaaaaccgaaa
gcaggaactgaccttcctgacctgcgtataacatgcaaggattgttcagttgctgaaggt
ggtaataagaagtccaaaatttgcattacagtttccgctgttgagacctcaaaaaattct
ctatcacttcgggatacacttcgtgatttggtgattccattccttcttcggacggtgata
aaagggttctccgcatttaaaaaagttgatatcttatggagagaattgcccagcccattg
aaatcttccagaagctctacttctcccggggaactatatttgcaggtcttcatgtcggaa
agttgtgacagaatcaaattctggaatgcgcttgtggatagttgcctccagataagggat
ttgattgattgggaacgcagttatcctgatgatgtccatgatctgactgtagcctatggg
cttgatgtagcatgggagtcttttctatgcaaactacattcagcggtgtctgaaactggc
aagaaaatccttcctgaacatttagttcttgtagcagattgtctcacagctacaggggaa
tttgctcccttgagtgccaaagggttgtcaatgcaaagaaaggctgctggtgttgtttca
ccatttatgcaagcgtgcttttcgaatccaggggattcgtttgtcagggctgccaagatg
agactgagtgacgatcttcaagggagtttagaatcattagcgtgggggaagactccttcc
attggaacgggttcgtcgtttgaccttatgttctctgcaaagggatatcagccggctaaa
ccaatggatgtgtatgctcggttgagcagccatgtcacagcggataagccaaaggtgatg
gtgactcctgatgacgatattgaaatggatggaaagtctcttgctcgacgtctttataag
cttgatgatctcaataaaaagagttgtaaaagccagtgggcaattgcaaagctgagaagt
ttgctttcattcaatgacataaagaagctctcccagtcactgaagcaaatgttgtccaaa
tatgctattgatggcgagttgagtgaagcagacaagtccatagtgatgatggcattacaa
tttcatcctcgaaggaatgagaagattggtacaggcgcgcaggaaataaagattggttac
cacaaagagtatgaggattcccgctgctttatgttggttcgtccagatggaacagttgaa
gacttctcgtatcgcaagtgtatgcaacatgctctggaactgattgctcctcagaaggca
aaaacctctaaatggttgaatggaatttcataa

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