Kaistella antarctica: NCTC13489_00740
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Entry
NCTC13489_00740 CDS
T06886
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cant
Kaistella antarctica
Pathway
cant03030
DNA replication
cant03410
Base excision repair
cant03420
Nucleotide excision repair
cant03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cant00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC13489_00740 (ligA)
03410 Base excision repair
NCTC13489_00740 (ligA)
03420 Nucleotide excision repair
NCTC13489_00740 (ligA)
03430 Mismatch repair
NCTC13489_00740 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cant03032
]
NCTC13489_00740 (ligA)
03400 DNA repair and recombination proteins [BR:
cant03400
]
NCTC13489_00740 (ligA)
Enzymes [BR:
cant01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NCTC13489_00740 (ligA)
DNA replication proteins [BR:
cant03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCTC13489_00740 (ligA)
DNA repair and recombination proteins [BR:
cant03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NCTC13489_00740 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC13489_00740 (ligA)
MMR (mismatch excision repair)
DNA ligase
NCTC13489_00740 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCTC13489_00740 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
HHH_3
zf-ribbon_3
Auto_anti-p27
BRCT_2
TF_Zn_Ribbon
Motif
Other DBs
NCBI-ProteinID:
VEH97192
UniProt:
A0A3S4YR09
LinkDB
All DBs
Position
1:complement(813682..815709)
Genome browser
AA seq
675 aa
AA seq
DB search
MYKSLLKMPEKIQQRIEDLRAELHQYNYDYYILDAAPISDFEFDLKLKELQELEKMHPEF
YDANSPTLRVGGEITKNFPTIQHQFRMYSLDNSYDFDDLEDWEKRLIKTIDEPVEFVAEL
KYDGASISILYENGKLKQAVTRGDGFQGDEITANVKTISDIPLTLKGDFPSPFFMRGEIY
LTRKNFDNINVRREEEGLDLFMNPRNTASGSLKMQDSGEVSKRKLSAVLYQFISAETPAE
THWELLQNSRKWGFKVSDQAKLCKNLDEIKDFINYWDEHRHKLPFEIDGIVLKVNSIKQQ
SQLGFTAKSPRWAMAYKFKAEKVETELVTVTYQVGRTGAITPVANLKPVLLAGTIVKRAS
LHNEDIIKKLGLHEHDFVYVEKGGEIIPKIVGINEDKRKPDSQEIQYITHCPECGTELVR
TEDQAIHFCPNDLHCPPQVVGRMIHYVSRKALNIEGLGAETIEQLYREKLVENPADFYTL
TKEQILPLERMAEKSAQNIIDGVENSKQIPFEKVLFGIGIKHVGETVAKKLAKNFDTIDD
LKNATAEDLIQVDDIGGKIAESIVNFFNDSENILMIERLKSYGVHLEKGESTSEVLSTVL
ENKTFLFTGKLSLFTREAAEEMVEKHGGKNISAVSKNLNYLVVGEKAGSKLKKAQDIGTI
EILDEQEFLDLVNQH
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
ttgtacaaatccttacttaagatgcccgaaaaaattcaacaaagaatagaagacctgcgt
gcagaacttcatcagtataattacgattactatattttagatgccgctcctatttctgat
tttgaatttgatttaaaattaaaggagcttcaggaacttgaaaaaatgcatcctgagttt
tacgatgccaactctcctactttgcgagtgggtggcgaaatcactaaaaacttcccgact
attcaacatcaattcagaatgtattcactggataattcttacgattttgatgatttagaa
gattgggaaaaacgcctcatcaaaaccattgatgaaccggtcgaatttgtagctgagcta
aaatatgacggtgcttcgatttctattttatatgagaatggaaaattgaaacaagccgta
acgcgcggcgacggttttcagggtgatgaaataacggccaatgtgaaaacaatttcagat
attcccttaacattaaaaggtgatttcccaagtccatttttcatgcgtggcgaaatttat
ttgacgcgaaaaaactttgacaatataaatgtccgtcgtgaagaagaaggtttggattta
tttatgaatccgagaaatacagcttcgggaagtttaaaaatgcaggattctggggaagtg
agtaagcgtaaattatcagccgtactctatcagtttatctctgcagaaactccggcagaa
acgcattgggaattattgcagaattccagaaaatggggctttaaagtttcagatcaggcg
aaattatgtaagaatttagatgaaatcaaagacttcattaattattgggatgaacatcgt
cacaaacttccctttgaaattgacggaattgttttaaaagtaaattcaataaaacagcaa
tcacaattagggtttaccgccaaatctccgcgttgggcaatggcctacaaattcaaagca
gaaaaagtagaaactgaattggttaccgtcacttatcaagttgggagaactggtgcaatt
actcctgtcgccaacctgaaacccgttttattagctggaaccattgttaaaagagcaagt
ttgcataacgaggatattatcaaaaaactcggtttgcatgaacacgattttgtctatgtc
gaaaaaggtggcgaaattattccaaagattgtcggtattaacgaagataaaagaaagcct
gatagtcaagaaatccaatatattacgcattgcccagaatgtggaactgagttagtcaga
actgaagatcaggcgattcatttttgcccgaatgatttgcattgtccgccgcaggttgtg
ggaagaatgattcactacgtttctcggaaagctttgaacatagaaggtttgggcgctgaa
acgatcgaacaactgtatcgtgaaaaactggttgagaatccggctgatttctatacctta
acgaaagaacaaatcttgcctttggaaagaatggcagaaaaatcagcccagaatattatc
gatggtgttgaaaattcaaaacaaattccatttgaaaaagttttatttggaattgggatt
aaacatgtgggagaaacggttgctaagaaactggcgaaaaactttgatacgattgatgat
ttaaaaaatgccacggcagaagacctcattcaggtagacgatattggcggaaaaatcgca
gaaagtattgtgaacttctttaatgattcagaaaatatcttgatgattgaacgtttaaaa
tcttacggcgttcatttggaaaaaggagaaagcacgagtgaagttttaagtacagtttta
gaaaataaaacttttttattcacggggaaactttctcttttcaccagagaagcggccgaa
gaaatggtcgaaaaacacggtggaaaaaatatttctgccgtttctaaaaacctcaattat
ttagtcgttggtgaaaaagctggcagcaaactcaaaaaagcgcaagatatcggaaccatt
gaaattttggatgaacaggaatttttagatttagtcaaccaacattaa
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