Crassostrea angulata (Portugese oyster): 128157792
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Entry
128157792 CDS
T09348
Name
(RefSeq) interferon-induced helicase C domain-containing protein 1-like
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
canu
Crassostrea angulata (Portugese oyster)
Brite
KEGG Orthology (KO) [BR:
canu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
canu04054
]
128157792
Enzymes [BR:
canu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128157792
Pattern recognition receptors [BR:
canu04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
128157792
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CARD_2
ResIII
RIG-I_C
Helicase_C
CARD
DEAD
RIG-I_C-RD
SNF2-rel_dom
AAA_22
AAA_19
Yippee-Mis18
AAA_25
LON_substr_bdg
Motif
Other DBs
NCBI-GeneID:
128157792
NCBI-ProteinID:
XP_052676376
EnsemblRapid:
LOC128157792
LinkDB
All DBs
Position
1:12522974..12546212
Genome browser
AA seq
1834 aa
AA seq
DB search
MGSLEKECLDALAVRRLFVFMKENLDFESLQDELIQRELLHEKEKEDYIYKTKSKHFWNE
KLIKLIIKKRRCKEFIEFINDMPCLTHISEKIVEIQKNTESSSSDLSVAVPISDALLQEH
LAILYNELEPREIADEMFQAGHINVSDHDDVTECPKKWKRMKCLLNILKKNKLYTPFGYT
LSLKYVEVLDVLQQGRETTSITSDHAQCIQHNFTLLQEELPGTDIATVTMERILDESNIS
DIECCSGAIRQKSKLLKILLMKGNSACMELLRVVEVDLKREDLLQTMKKRSANIKERGKP
KLPTSLQRLDISCLQEHKKVLHDELDPFDHSDLLFEERAIEIIAHDQITESDLRNKQIEY
LLKTIEENKNDCFHFFLYILQKEEYEYILQKLCERPAPKIESSESVGTLNWKLSHSVKKV
PDAVHNENISVRLSIEDCSRAHVEENLFERIQSPGLGILEEAIVHGQMIPGDIYRGSIIL
HLRPVTDEAAQTLLNAKDNNKLLEMIFRILKKVKVEDIIDEEEPLKIKVQVQYAKSSKER
QDSSLSKVALIKKRVKIHSNVLVSELEPRALASLLSKSTNLPDNIMLSVNNARSCKERVE
KILSLVEAGNAGVVEDFMNALKDLGYFDIVELIDPCDIHSKAENIRKVITYNYQHILNEM
QMALVRETLSKCIGDVDGIRDKCLPRNGQRRQRMSQFLQFVLQDDHNVIEFERVMKKNGL
DSLLKIDENSEEDPTPNIDVTIVEEDHNSLSSKEVLFESIITLSYTGNCHERITLQNRAS
NTNEEGVMADHLSSEPSSSIDNMPSIKNSLNSFETPKLVELYRPLVVRCVKVNDVVHYLD
DVISTRDREEIVEIGNQKGSTVAMDYLLSAIDGSSSSVRWTKFVDILNRKGYQYVAKALC
GEEVNSDAYRRYKNLLGPLKMDFVERVNPNHLLCLLEGQEKIIEWSDFEHINAEMGNKGA
MAGMIVLLDRIWRKSENWYTSFLKVLCQKEYNDLVEKIDPVFALEWNKRKTLENTRVQAV
TSTNVVDGDEKVTKLSTPVQCSNEEEYKLPPPLDLESLLSGNSQADNLKSVQGDKGFIQD
IHDVEITNAKAVVKAKDKNEDETDLKKRYQTASALSVEENRHESADDQGTSLETFEERLY
QNELALPAQRGENCIIIAPTGSGKTIVAVKIIKHHLEVNRLHGVRKVAFVVEKNNLANQQ
SETIKRFVDCRLKVISGDTMRDEDFTELAVLLPQFDVFVITAQMLVNAMVKGDLRIESFS
LIILDECHHCHGGHAFYKTMIPYHDKKLEDSEEQKTLPQIVGLTASIGVGKAKSQTQAIS
HIKLMMANLDANALVSVKENFAELAEKMNSPDQSILKIPSRKIDDFGALIKELMQKTEDC
LTVAKDELGENMNPPYSKGNEEYTQWLEITLLKAVAKVSDSVLSRSLYTIRKYLKTYNEG
LIVHSYARASDAFSFIAQNIEELQKSSKKTEVETQANALFENARGNLEICAVDGMRCEEN
PLLLKLKEIILDTHREETNMRGIVFVRTRVVADIIASWMGETEELKNIKAKKYTGAQAPG
AEGGITKNKQEETIKLFTKGDYKVIVATTIAEEGLDIKACNLVVKYDYAGNLISQIQAKG
RGRAEHSRFFILASEDKCVAEREWMNSLKEPMMEEAMVLVQQEIQVEHEKYQMGKRELQR
LAKRQRDAALHNQSSREALEGQYVLKCLKCNEYLCLSSELRKIKSQYGCISQDFKDHVFC
KKSDKITYEDKDIKVGVGKIMCKKCRVNIGNIALYQEIYFPLPHIKAIKIEDDMKKGDHL
KQWKKVEEKYFTVSPLSDEDLEKISESGKLVEID
NT seq
5505 nt
NT seq
+upstream
nt +downstream
nt
atgggatctcttgaaaaagaatgcttagacgcattggctgtcagaagattatttgttttt
atgaaagaaaaccttgattttgagtcattgcaagatgaattgattcagagagaattatta
catgagaaagaaaaagaagactatatatataaaactaagagtaaacatttttggaatgaa
aaactaatcaaactaattatcaaaaaaagaagatgcaaagaatttattgaatttatcaac
gatatgccttgccttacacatatttctgaaaaaattgtcgaaattcagaaaaacacggaa
agttcatcatcagatctatcagttgctgtgccaataagtgatgcattattgcaggaacat
ttagctatcctttacaatgaacttgaacctcgtgaaattgcagatgaaatgtttcaggct
ggtcatattaacgtcagtgaccacgatgatgtgactgaatgtcccaagaagtggaaacga
atgaaatgtcttttgaatatattaaaaaagaataagttgtatacaccttttggttacaca
ttgtctttgaagtatgtggaagtgctggacgtattacaacagggcagagaaacaacaagc
atcacatccgaccatgctcaatgcatacaacataactttactctcctccaagaggaactc
ccgggaactgatattgctacagtcactatggagcgcatactcgatgaatcgaatatcagt
gacatagagtgttgttctggtgcaatacgccagaaatccaagctgcttaaaatactattg
atgaaaggaaactctgcctgcatggaacttttaagagttgtggaagtggatttgaaaaga
gaagatttgctacaaactatgaaaaaacggagcgctaatataaaagagagaggtaaacct
aagttgcctaccagtctacaaagactggacatttcgtgtcttcaagaacataaaaaagtt
ttgcatgatgaactggatcctttcgatcatagcgacctcttgtttgaggagagagcgata
gaaattattgctcatgaccaaattacagaaagtgatttacgtaataaacagattgaatac
cttttaaaaacaatagaggaaaacaaaaacgattgttttcattttttcttatacattctt
caaaaagaggaatacgaatatattcttcagaagctgtgcgagaggccggccccaaaaatt
gaaagttctgagtcagttggaacattaaactggaaattatcgcacagtgtaaaaaaagta
ccagatgccgtacacaatgaaaatatatctgtccggttgtcgatagaggattgcagtaga
gcacatgtagaagaaaatttatttgaacgtattcagtctcctggtttggggattctagag
gaagctattgttcatggacaaatgatacctggggatatttatcgtggttccataatcctt
catttaagaccagtaactgacgaagctgctcaaacattgctaaatgctaaagacaataac
aagctattggaaatgatttttagaatcctcaaaaaggttaaagttgaagacattattgat
gaagaagagccactgaaaatcaaggtgcaagttcagtacgcaaagtcatctaaagaaagg
caagattccagtctttcaaaggttgccctaataaaaaaacgagtgaaaattcatagtaat
gttcttgtgtcagaattagagccaagggctttggcatcgctattgtcaaagtctacaaac
ttgccagataatatcatgctctcggttaataatgcgcgtagttgtaaagaaagagttgaa
aagattttgtcattggttgaagctggaaatgctggggttgtggaggattttatgaacgct
ctaaaggatcttgggtattttgacattgttgagttgattgacccctgtgacatccacagc
aaagcagaaaatatcagaaaagttataacatataactatcaacacatcctaaatgaaatg
caaatggcattagttagagaaacattatcaaagtgtattggagatgttgatggtataaga
gataaatgtttgccgcgaaatggacaacgcagacaaaggatgagtcaatttcttcagttt
gttctacaagatgaccacaatgttattgaatttgagagagtaatgaagaagaatggttta
gattcacttctaaaaatagatgaaaatagcgaagaagatccaacaccgaacattgatgtg
accattgttgaggaggatcataactcattatcttcaaaagaagtcttatttgagtccata
atcaccttgtcttatactggaaattgtcatgaaagaataacactacaaaacagagcaagc
aacaccaacgaagagggtgtgatggcagaccatttatccagtgagccttcaagctcgatt
gacaacatgccaagcatcaagaacagtctgaattcttttgaaacaccaaagcttgtggaa
ttgtacagacctctggttgtacgatgtgttaaggtcaacgatgttgttcattacctggat
gacgtcatttctacacgggatcgcgaggaaatcgtcgagattgggaaccaaaaaggctca
actgttgcaatggattatctcttgtctgcaattgatggaagtagtagcagtgtcaggtgg
acaaaatttgttgatatcttgaatcgcaaaggctaccagtatgtggcaaaagctttatgt
ggcgaggaagttaacagtgatgcctaccgaaggtataaaaatcttcttggaccgctaaaa
atggattttgttgaaagagtaaatccaaaccatttattgtgtttgttggagggccaagaa
aaaataatcgaatggtcagatttcgaacacatcaatgctgaaatgggaaacaagggtgct
atggctggaatgatagttcttttggacagaatctggaggaaatccgagaactggtacact
tcattcttaaaagtgttgtgccaaaaggaatacaacgatcttgttgagaaaatcgaccca
gtgtttgccttagaatggaacaaaagaaaaacattggaaaacacacgtgttcaagctgta
acatcaaccaatgttgtggatggggatgaaaaggttacaaaattatcaacgcctgtccaa
tgttccaatgaggaagaatataaactccccccaccactggatttagaaagtcttctttct
ggaaattcacaagctgataatcttaaatcagttcagggagacaagggttttattcaagat
atccatgatgtagaaattactaatgcaaaagcagtcgtaaaggccaaagacaaaaatgaa
gacgaaaccgatttgaaaaagagataccaaactgcatcagcgttatcggtggaagaaaac
agacatgagtctgcggacgaccaggggactagtttggaaacattcgaggaaaggctgtat
cagaatgagttagctttgcctgctcagcgaggtgaaaattgtattataatagcaccaaca
ggaagcggaaaaacgatcgtagctgtcaaaataatcaagcaccacctcgaagttaacaga
cttcatggagtaagaaaagttgcgtttgtggtagaaaaaaataatttagccaaccaacag
tctgagactatcaagcgttttgtggactgtcgattgaaagttatatcaggagacaccatg
cgtgatgaggattttacagagcttgctgttctccttccacaatttgatgtttttgtcata
acagcacagatgttagtaaacgcaatggttaaaggagatttgcgaattgaatcattttct
ctgattatcttggacgaatgtcatcattgtcatggcggccatgccttctataaaacgatg
attccttaccatgacaagaagctcgaagattcagaggaacagaaaactcttccacagatt
gttggattaacggcatctattggagtgggaaaggctaaatctcaaacacaagccatcagt
catataaaattaatgatggctaacctggacgcaaacgcattggtgtctgtaaaagaaaac
tttgcagaattagcggagaaaatgaattcaccagatcaatctattttgaaaataccaagt
agaaagatcgatgactttggagcactcattaaggaactaatgcagaagactgaagattgc
ctgacagtggcaaaagatgaactaggtgaaaatatgaatcctccctattccaagggtaat
gaggaatatacccaatggctagagattactctgctgaaagctgttgcaaaggtttctgat
tccgtccttagtcgatccttgtatacaattaggaaatatcttaagacgtataatgaaggg
ttgattgtacactcctacgctagagcaagtgatgctttcagcttcatcgctcaaaacatt
gaggaactccaaaaatcgagcaaaaagactgaggtagaaacacaagcaaatgctcttttt
gaaaatgcgagaggaaatttagaaatatgtgccgtcgacggtatgagatgtgaagaaaac
ccactcctgctaaagctaaaggaaatcattcttgacacacatcgagaagaaaccaatatg
agaggaatagtgttcgttcgcacacgagtggtcgctgacatcattgcatcgtggatggga
gagacagaggaattaaaaaatattaaggccaaaaaatacacaggggcccaggcccctgga
gctgaagggggaatcaccaaaaacaaacaggaagaaacgattaaattattcacgaagggg
gactataaagtaatcgtagctacaaccatcgcagaagagggtttggatatcaaagcatgc
aatcttgtagttaaatatgactacgctgggaatctgatatcacagatccaagccaaaggc
aggggacgggcagaacatagcagattctttattctggcgtcggaggacaaatgtgttgca
gagagagaatggatgaattctttaaaagaaccaatgatggaagaggcaatggttttggtt
caacaagaaatccaggtcgagcatgaaaaatatcaaatggggaaacgagaattgcaacgt
ttggcaaaacgacaacgagatgctgcactccacaaccaaagctccagagaggctcttgaa
ggacaatatgttctaaaatgcttgaaatgtaacgagtatttgtgcctctccagtgaactg
aggaaaataaaatcccaatacggttgtatcagtcaggattttaaagatcatgttttctgc
aaaaagagcgacaaaattacatacgaggataaagatatcaaagtaggcgtgggaaagata
atgtgcaaaaaatgtcgtgtcaacattggaaatatcgctctttatcaagaaatttatttc
cctttgccgcatatcaaagccatcaagatagaagatgatatgaaaaagggcgatcacctt
aaacagtggaaaaaggttgaagaaaagtatttcacggtcagtcctctttctgatgaggac
ttggagaagatttccgagtctgggaaacttgtggaaattgactga
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integrated database retrieval system
