Magallana angulata (Portugese oyster): 128157987
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Entry
128157987 CDS
T09348
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm3
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
canu
Magallana angulata (Portugese oyster)
Pathway
canu03018
RNA degradation
canu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
canu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128157987
09123 Folding, sorting and degradation
03018 RNA degradation
128157987
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
canu03019
]
128157987
03041 Spliceosome [BR:
canu03041
]
128157987
Messenger RNA biogenesis [BR:
canu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
128157987
mRNA degradation factors
5'-3' decay
Lsm complex
128157987
Spliceosome [BR:
canu03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
128157987
Complex C
U2 snRNP components
128157987
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
TIG_SUH
DUF8043
YfkB
Peptidase_M16_M
DUF8104
Motif
Other DBs
NCBI-GeneID:
128157987
NCBI-ProteinID:
XP_052676617
LinkDB
All DBs
Position
8:48768731..48773127
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AA seq
103 aa
AA seq
DB search
MADDQEQQVPVQNVEEPLDLIRLSLDERIYVKMRNERELRGRLNAYDQHLNMILGDVEET
VTTVEIDEETFEEIYKTTKRNIPMLFVRGDGVILVSPPMRTGT
NT seq
312 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgatcaagagcagcaagttccagtgcaaaatgtggaagagccgttagatctg
attcgacttagtcttgatgaaagaatttacgtgaaaatgagaaatgagcgagaattacgt
ggaagattaaatgcatacgatcagcatctgaacatgattcttggagatgttgaagaaacg
gttacaacagtggaaattgatgaggaaacatttgaggaaatttacaagaccacaaagagg
aacatccccatgctgtttgttcggggggacggggttatcctggtctcacctccaatgagg
accgggacttag
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