Crassostrea angulata (Portugese oyster): 128168502
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Entry
128168502 CDS
T09348
Name
(RefSeq) antiviral innate immune response receptor RIG-I-like
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
canu
Crassostrea angulata (Portugese oyster)
Brite
KEGG Orthology (KO) [BR:
canu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
canu04054
]
128168502
Enzymes [BR:
canu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128168502
Pattern recognition receptors [BR:
canu04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
128168502
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
ResIII
Helicase_C
RIG-I_C-RD
RIG-I_C
SWI2_SNF2
CARD_2
AAA_22
CARD
AAA_19
SLFN-g3_helicase
Helicase_C_2
Sigma54_activat
STL11_N
Lipocalin
Motif
Other DBs
NCBI-GeneID:
128168502
NCBI-ProteinID:
XP_052690671
EnsemblRapid:
LOC128168502
LinkDB
All DBs
Position
Unknown
AA seq
1109 aa
AA seq
DB search
MVSLYRPLLKDCIGGTDLLSDLGDVIDENGRREVRRAGKREGASGSMQVLLGLIDASPNQ
DKWEIFYKALKNNDFEHVITALKYEKIPNTVRKVYSELLLQPENIKHLHGLLSSDSQKKL
VERNVLFNEDIYNISSEREKTESDTAAVLVLLDRLWRKNTKWIEELSNIFKSKDDVFSQK
LFQYSTGAEETEPKEVSNVVKEDSGVTMTYVDRDRRQKAKSEQEETEPKTLLHTDAQLLH
MASGTSESNRVTETESSPATFSTDVHENTRLSDLPERIGESLSTLHTEPCVGGSTHLSDL
PKKVGESLSSLSSESCMRGSQEISISDPGEYISIESPREVHQNSAREVTTGEINQIGEVL
DATVERSRLRNDSAMYRDEESEVSSDKDDGPRSEKDINEATEKETFPTLTMRNYQLELAE
IALSGRNTIICAETGTGKTYVALYLTQQHLASKNDACVVFLARTNALVEQQYEKFSKFLY
KYKVYHLKTDKTAAMGRKLVMAKENHQVFFMTPQILLNNINSKQISLQEVSLLILDECHH
TRKREPYNNVMKQYLHLKRDSKNTSLPRVLGLTATIGVGKSSTLDGAVSHILSVCASLDV
LDISMVKNNKEELESHVAIPKRETKKLMEKEKDLPKHIILEKMELIEKYVAKTEVVNQPK
LKKQWDKKPKKRDGKQYQKWTIHLRNRVICKLKTEPTLLRQLHAALTHLSTYNEALAVNY
LMNSTHVAEFLKQKLADDIKQHKVILKEKASFNDAEDKLLRYHEEVCQQLELLRGVTNDH
LKTLRDILVELRTDLGDDVKGMIFVETRATAFALAKYITEELEMMRYRAGPFTGSKSSDS
SEGMLEEEKTDTLKKYRKGEINLLVATSVGSEGIDVPDSNFIITYNYTGNEADIMQMSGR
ARRQDSTVTHISDQTIQRREETSLQKALLMARAFDRLGDMKEEDRHRKIREQQTTIKDTE
IGSFFLENSVTKETMSFAIICWKCQAFAVHGNDVRIYTGQHRIVLDPDFLDRCVLEDLDE
TSRFKKRIIRCKECKTKWGTTFGVDEFEVPVLKVKAFLFVPGYTGGDLSEWKERKRFKTW
GRVEFAIANIGKIKLLENLNNGKNDVITT
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
atggtgtccctctaccggcccttgctgaaggattgtatcggtggcactgaccttctgtct
gacctcggtgacgtcatagacgaaaatggcagacgggaggtccggagggcggggaaaagg
gaaggagcctcggggtccatgcaggtcctactgggtctgatagacgccagccccaaccag
gacaaatgggaaatcttctacaaggctctgaaaaataacgattttgaacacgtgatcact
gccctgaaatatgaaaagattcccaatactgtacggaaagtgtattccgaactattacta
caacctgaaaacatcaagcatttacatggtctcctgagctctgattcgcaaaagaaattg
gttgaaagaaatgtgctatttaatgaagacatttacaatatttcatcagaaagagaaaag
accgaaagtgacacagccgccgttttggtacttttggacagactgtggagaaaaaacacg
aagtggattgaggagttgtcgaacattttcaaatcgaaggatgacgtcttctctcagaag
ctttttcagtacagtacaggtgcggaagaaacagaaccaaaggaagtttctaatgttgtc
aaggaagacagtggcgtcacaatgacgtatgttgatagagaccggaggcaaaaagccaag
tctgaacaggaagagaccgaaccaaaaacattgctacatactgacgcccaactattgcac
atggcatcgggaacatccgaaagcaatcgtgtaactgagacggaaagtagtccggccact
ttctccacagacgtacatgaaaacacgagactctcagacttacccgaaagaatcggagaa
agtctatccactttgcacacagaaccctgcgtggggggaagcacgcatctctcagactta
cccaaaaaggtcggagaaagtttgtcctctttgagctcagaatcctgcatgaggggatct
caagagatctcgataagtgaccctggagaatatatatctatcgaatcaccaagggaggtc
catcagaactcagctcgcgaagtaactacaggtgaaattaatcaaataggcgaggtttta
gatgctactgtggagcgatcccggctccggaacgactcggcgatgtatagggacgaagaa
tcggaagtgtcatcggacaaagacgacggtccgcggagtgaaaaggacatcaatgaagcc
actgagaaggaaacctttcctacactgacaatgaggaactaccagttagagttagcggaa
atagctttgagtggtcggaacaccataatctgcgcagaaaccggaaccggaaaaacatac
gtggcgctctacctcacacagcaacatcttgcaagcaaaaatgacgcctgtgttgttttc
ttggctcgaacaaacgccttggttgaacaacagtacgagaagtttagtaagttcctatac
aaatataaggtttatcatttaaaaacggacaaaaccgcggcaatgggaaggaagctagta
atggcgaaagagaaccaccaggttttcttcatgactccccaaattctgttgaacaacata
aacagcaaacagatctctctacaggaagtgtccctcctgattctggatgaatgccaccac
acgcgcaagcgcgagccgtacaacaacgtgatgaagcagtaccttcacctgaagagggac
agcaagaacacctctcttcctcgggttcttggactaactgctacaataggggtgggtaaa
tccagtaccctggacggagccgtgtcacacattctaagcgtgtgtgcaagtttagacgta
ttagacatttcaatggtcaagaacaacaaagaggaattagaaagtcacgtggcaatacca
aaacgagaaaccaagaaattgatggaaaaggagaaagacttacccaaacatatcattttg
gaaaaaatggagttgattgaaaaatatgttgcgaaaactgaagtcgtcaatcagccgaaa
ctgaagaaacaatgggacaaaaaaccaaagaaaagagatggtaaacaatatcagaagtgg
accattcatctgagaaatagagtgatctgtaaactgaaaacagagcctacactcctgaga
cagttacacgcagctctcacacatctgtcgacctataacgaggctcttgctgtcaactac
ttaatgaacagcacccacgtggcagaattcctgaagcagaagttggcagacgatataaaa
cagcataaggtgatactgaaggagaaggcgtcttttaatgacgctgaagataaacttttg
cgatatcatgaagaggtttgtcagcaattggagttattgagaggtgtcactaatgaccat
ctaaagactttgagggatatcctagtcgagcttcggactgaccttggcgatgacgtcaag
ggcatgatcttcgtggaaaccagagccactgcctttgccctcgcaaaatacatcactgaa
gaattagaaatgatgagatacagggcagggccattcaccggaagtaaatccagtgacagc
agtgaaggtatgcttgaggaagaaaagaccgacactttgaagaaatacaggaaaggggag
atcaatctattggtggcgacctctgtcggcagtgaggggattgatgtcccagacagtaac
ttcatcatcacctacaactacaccggaaacgaggccgacatcatgcaaatgagtggacgt
gcaagacgacaggactccacagtgactcacatctctgaccagacgatacagcgccgagag
gagaccagtctacagaaagccctactgatggcgcgtgcgtttgaccgcctgggtgacatg
aaggaggaggaccgacacaggaagatccgggagcagcagacgacaataaaggacacagaa
atcgggtccttcttcctggaaaactcagtaacaaaagaaaccatgtcattcgccattatc
tgctggaaatgtcaggcgtttgcagtacatggcaatgacgtcagaatttataccggtcag
caccggattgtactggatccagactttctggaccgctgtgtgctggaggacttggacgaa
acttcgaggttcaagaagcggattatccgttgtaaggaatgtaaaacaaaatgggggacc
acgtttggggtggacgagtttgaagttcctgtcctaaaggtgaaagcctttctcttcgtc
cctgggtacaccggaggagatttgtcggagtggaaggaacgcaagcgcttcaagacctgg
gggagagtggagttcgccattgcaaacatcggcaaaatcaagctgcttgagaatctcaac
aacgggaaaaatgacgtcataaccacgtaa
DBGET
integrated database retrieval system
