Crassostrea angulata (Portugese oyster): 128179382
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Entry
128179382 CDS
T09348
Name
(RefSeq) antiviral innate immune response receptor RIG-I-like
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
canu
Crassostrea angulata (Portugese oyster)
Brite
KEGG Orthology (KO) [BR:
canu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
canu04054
]
128179382
Enzymes [BR:
canu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128179382
Pattern recognition receptors [BR:
canu04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
128179382
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ResIII
CARD_2
DEAD
RIG-I_C-RD
RIG-I_C
Helicase_C
CARD
SWI2_SNF2
Yippee-Mis18
IstB_IS21
AAA_19
AAA_30
nSTAND3
AAA_22
AAA_11
NACHT
Big_2
DUF6759
Sigma54_activat
Motif
Other DBs
NCBI-GeneID:
128179382
NCBI-ProteinID:
XP_052702754
EnsemblRapid:
LOC128179382
LinkDB
All DBs
Position
4:complement(31454976..31469501)
Genome browser
AA seq
1152 aa
AA seq
DB search
MCSKGPVSTLSGMVSIRCTLGTRDVPTLVALYRPLIVRCARGIELLFHLKDAIDDQGRQE
VRQASRNLGDIASMECLLTHLEVSEHPQKWQMFVDALENNEYHYLADALKGQEVPRDVFV
KFRKLLMEHNLQFIGRFNPTDVLPELHRRKVLNDMDKENIIAEQRTQGNMGATGVLLDRV
WRRHTNWYEEFLDVLCKDYLDIVKRMDTEFYEKWQIANNRQVELPVKQLASSSEISGSKK
EDSDMVPPESSPSSNRLDSFGRKSSFSIREDYISATGDPHNTLGDRSTSPQDSIAFEPSG
ELTLNSLYSDFGDYDDEITQEKRRIAQEQLNSLHSVQKREPEDKSIEDLGIPDTSGGHTK
SFVSTTGSRSTNLRANIQAGDQENLSSIPSLSGGATSSLVGRLLQSIENCVNEDLQREGG
AVPNIIGPEHPIIDTESVDENNESSDEEERIPAKPLNLRSYQMELAQAALQDKNCIIVAP
TGSGKTHVAMKIIQNHREKRRRLNIPKVAFLVEQSALAEQQGKVCKEYLGCKIKVITGEK
QRTESLQSLSCWIQKKDVLVITAQILVNALATGDVQIEAFSLIVFDECHHSHAKHPYNQI
MAYYLDLKLEDKHKQLPQIVGLTASVGVGTAEKEEKAIGWIISMMANMDAEELSVVEENK
AELAQHVYIPDQDVVKTNSRKKNDFGRIIDGIMKAIHRWMIQSIHAKALTDQSVLKPPAE
CGNNQYTQWLSRLWKEGAKIVDEKARRFIHSCRVNLDMYNKALIIYTNARTSDSLAFIKD
ELRRWDKHQILDDTDIKLRSFFEQTYGRLQTYTMDPDYNNPKLMELGRLILQAFGYDADS
RGIILVGTRDLVKAIHRWMMETDDLRHLKPVMFTGAQAKSSAGGMTKVQQIDALSLFKEG
RHKIVIATSVAEEGLDIQKCNLVILYSYVSNEIAMVQARGRERCENGKYSVVAEQGDKTA
EREELNIIREAMMNRAIDLLREKFRRERRECLNIILGLQENAKTERDLAAKNEEGFLVRR
GEYVLRCQKCSKYICMSNEVRKIQNAHHACICDDIKERVLGQLLPRPQFEDVDLKCAVAK
LLCRSCGSDLGNVSVYKNAQFPILKIEGLLMEDNMGRRDVKNKLKSLPFLVKEITAEDIQ
QRARGEKLIDMI
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgtgctctaagggcccagtcagcaccctctctgggatggtcagtataagatgtacacta
ggcacccgtgatgtcccgacactagttgctctgtataggcctctgatcgttcgttgtgcc
cgaggaatagagctactctttcacttaaaggatgctattgatgatcagggccgacaagag
gtacgtcaagccagcagaaatctaggggacatcgcctctatggaatgcttgcttactcat
ttagaagtcagcgaacatcctcaaaaatggcaaatgtttgtggatgctttggagaataat
gagtaccactacctcgcggacgctctgaaaggccaggaagtgccaagagatgtattcgtc
aaatttaggaaacttttgatggaacacaaccttcagttcatcggacgatttaatccaacg
gacgtccttccagaacttcataggaggaaagtgttaaacgatatggataaagaaaatatt
atagcagaacaaaggacgcagggaaacatgggagccacaggcgttcttcttgatcgagta
tggcggcggcataccaattggtatgaagaatttttggatgttctttgcaaagactacctg
gacattgtcaaaagaatggacacggaattttatgagaaatggcagatagcaaacaacagg
caagttgaacttccagtaaaacaacttgccagctcttcagaaattagcggtagtaaaaaa
gaggattcagatatggtaccaccagaatcttcacctagctcaaacagattggattctttt
ggcaggaagagttctttctcaattcgtgaggactacatatcagcaacgggtgatccccac
aatacccttggtgatcgctccacttccccacaagatagcattgcttttgaaccaagtggc
gagctgacgttgaatagcctttacagtgattttggtgattatgacgatgaaataactcag
gaaaagagaaggattgcacaagaacaactaaattccctgcattcagttcagaaacgggaa
ccggaggataaatctattgaagatttggggattccagacacatcaggaggtcataccaag
agttttgtgtcaaccacaggttcaaggtcaacaaatctgagggcaaacatccaggctggt
gaccaggaaaacctgagtagtattccctcccttagcggcggtgcaacttcatctttggtg
ggccggctgttacaaagtatagagaattgtgtcaatgaagatttgcagagagaagggggc
gctgttcccaatatcataggacctgaacatccaatcatcgatacagagtctgttgacgaa
aacaacgagagttcagacgaagaagaacgcatccctgctaaacctctaaacttgcgcagc
tatcaaatggagttggcacaagcagccctgcaagataaaaactgcatcatcgttgctcct
actggaagtggaaaaacacatgttgctatgaaaatcatacagaatcatcgtgaaaaacgg
aggcgtctgaatataccgaaagtcgcttttttagttgaacaaagcgctcttgcagaacaa
cagggaaaagtttgcaaagagtatctgggttgtaaaattaaggttatcactggagagaag
caacggacagagagcctccagagtctttcgtgttggattcagaaaaaggatgtactggtc
atcactgcacagattttggttaatgcgttggctacgggggacgttcagattgaagctttc
tccttgatagtttttgacgaatgtcaccactcgcacgccaagcatccatacaatcaaata
atggcgtactatctggatcttaagctggaagataagcacaagcaactcccccaaattgta
ggtctgacagcttccgttggagttggtacggcggagaaagaagagaaagcaattggctgg
atcattagcatgatggccaacatggacgccgaggaacttagtgttgttgaagaaaataag
gcggaattggcccaacatgtttatattccggatcaagatgtggtaaaaactaactcaaga
aagaaaaacgacttcgggcgaatcatagatggcatcatgaaggcgattcatagatggatg
attcaatctatacatgccaaggctctgacggaccagagtgttctgaagcccccggcggag
tgtggcaacaatcagtacacacagtggctcagtcgactgtggaaggagggggcaaaaata
gtagacgagaaggccaggcgcttcatccattcctgcagagtcaatctggatatgtacaac
aaagccttgattatatataccaatgcacgcacctctgattcccttgccttcatcaaagat
gaactgaggcgttgggacaaacaccaaattctggacgataccgacattaaactcagatct
ttcttcgaacaaacctacggaagactacagacatacacaatggatccagattacaataac
ccaaagctgatggaactaggaaggttgatattgcaagcatttgggtatgatgctgattca
cgaggcataatattggtcggaaccagagatttggtgaaagcaattcaccgttggatgatg
gaaacggatgatctgcgccatctcaaacctgtcatgtttaccggagcgcaagccaagagc
agcgcaggaggaatgacaaaggtacagcagattgatgctctaagcctgttcaaggagggt
cgacataaaattgtcattgctacatctgtggctgaggaaggtctagatatccagaaatgt
aatcttgtgattctgtattcttacgtcagtaatgagatcgccatggtccaggcaagaggg
agggaaagatgtgagaatggaaaatactctgtggtggctgaacagggagataagactgct
gagagggaggagttgaacatcatcagagaagctatgatgaaccgtgccatagatctgttg
agggagaaatttaggagggagcggagagaatgtctgaacatcatacttggcttgcaagaa
aatgctaaaacagagcgtgacctggcagcgaaaaatgaagaaggattcttagttcgccgg
ggcgaatacgtgctcagatgtcaaaagtgtagtaagtacatatgtatgtcaaatgaggtc
agaaagatacagaacgcccaccatgcctgtatttgtgacgacattaaagagcgagtcttg
gggcagctcctgccccgcccccagttcgaggacgtggaccttaagtgtgccgtcgccaag
ctcctctgccgatcctgtgggtcagatctaggaaacgtctccgtctacaaaaatgcccag
ttcccgatcctgaagatagaggggctcttgatggaagacaacatgggccgacgagacgtg
aagaataagttgaagagcttgccattcttggtgaaggaaataactgctgaagatatacag
cagcgtgctcgtggagagaaactcattgatatgatctaa
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integrated database retrieval system
