Caldilinea aerophila: CLDAP_29070
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Entry
CLDAP_29070 CDS
T01797
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cap
Caldilinea aerophila
Pathway
cap03030
DNA replication
cap03410
Base excision repair
cap03420
Nucleotide excision repair
cap03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CLDAP_29070 (ligA)
03410 Base excision repair
CLDAP_29070 (ligA)
03420 Nucleotide excision repair
CLDAP_29070 (ligA)
03430 Mismatch repair
CLDAP_29070 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cap03032
]
CLDAP_29070 (ligA)
03400 DNA repair and recombination proteins [BR:
cap03400
]
CLDAP_29070 (ligA)
Enzymes [BR:
cap01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CLDAP_29070 (ligA)
DNA replication proteins [BR:
cap03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CLDAP_29070 (ligA)
DNA repair and recombination proteins [BR:
cap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CLDAP_29070 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CLDAP_29070 (ligA)
MMR (mismatch excision repair)
DNA ligase
CLDAP_29070 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CLDAP_29070 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
BRCT_2
Auto_anti-p27
HHH_3
HHH_8
UPF0758_N
RUBY_RBDX
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
BAM00947
UniProt:
I0I6Q9
LinkDB
All DBs
Position
3602703..3604790
Genome browser
AA seq
695 aa
AA seq
DB search
MTFDHLAGENAAIDAELAARAARLRELIRYHQYRYYVLDDPEISDQEFDALFHELVALEA
AHPELRTPDSPTQRVGGFIADRFEKAQHPVPMLSLANAFSPGELHAWRDRLHRLLDAEDR
AQLAYVVEPKFDGLTVVLHYQDGLFTLGATRGDGEYGEVITANLRTVRSLPLTIPAHRDA
NLPAPKRLVVRGEAYVDKADFQRFNQQQIEAGERTYANPRNFAAGSLRQLDSSITARRPI
KLWVYQALVIEGGPSLASHWEALSYLRSLGFPVCPLNKRFTDEEFDRLMAHVEAFGERRH
DLPYEVDGVVIKVDSLALQEKLGFTGKDPRWAIAYKYAGEEAVTTLLDIVVNVGRTGAVT
PNAVLEPVPIGGVIVKSATLHNEDYIRDLDIRIGDKVVVKRAGEVIPKVLRPLPELRTGA
ERIWSMPKHCPVCGAPLVRPEGEAATYCVNNACPAQLVRAVEHFVSRQAMDIAGFGIRQA
ELFVERGFIRDLADIYQLPWDEIRKLEGYGDKRVENLRAAVEASKDRPIHRLLTGLGIRY
VGAVVAELLTQHYHSLFDLMNASPEELSAIEGIGPKIAASIHDYFSVPANRALLEKFARL
GVRVAERPPAPVEQAAMQPLAGLTFVVTGTLPGFTRTEVEEFIKAHGGKVAGSVSSKTSY
VVAGEAAGSKLAKAQQLGVPVIDEATLRAMAEGRR
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgatcatctcgcaggcgagaatgctgcaatcgacgccgagctggccgcgcgg
gcagcgcgcctgagggaattgattcgctatcaccagtatcgctattacgtgctcgacgat
ccggagatcagcgaccaggaattcgacgcgctgtttcatgagcttgtcgccctggaggct
gcacaccccgagctgcgcacgccggacagccccacgcaacgcgtgggcggcttcatcgcc
gatcgatttgaaaaggcgcagcaccccgtgccgatgcttagcctcgccaatgcgttcagt
ccgggcgagcttcacgcctggcgtgatcgcctgcatcgcctgctggacgccgaagatcgc
gctcagctcgcttacgttgtggaacccaagtttgacgggctgacggtggtgttacattac
caggacggcctcttcacgctcggcgccacgcgcggtgacggcgaatatggcgaggtgatc
accgccaatctgcgcacggtgcgctcgctgcccctcaccattccagcgcatagggatgcc
aacctccctgcaccgaagcggctggtcgtgcggggggaggcctacgtcgataaagccgat
ttccaacgcttcaaccaacagcagatcgaagcgggcgagcgtacctacgccaacccacgc
aacttcgccgccggcagcctccgccagctcgactccagcatcacggccaggcggccgatc
aaactgtgggtctaccaggcgctcgtcatcgagggcggcccctcgcttgccagccattgg
gaggcgctgagctatctccgttcgcttggctttccggtctgtccgctcaataaacgtttc
acggacgaggaattcgacaggctgatggcccatgtcgaggcgtttggcgagcggcgccac
gatctgccttacgaggtggacggcgtcgtcatcaaggttgattccctggccctgcaggag
aagcttggcttcaccggcaaagacccgcgctgggcaattgcttacaaatatgcgggggag
gaagctgtcaccactttgctcgacatcgttgtcaacgtcgggcgcacgggcgcggtcacg
cccaacgccgtgctcgaacctgtgccgatcggcggcgtgatcgtcaagagcgccacgctg
cacaacgaggactacattcgtgatctcgacatccgcatcggcgacaaagtggtggtcaag
cgcgccggcgaggtgatccccaaagtcctgcggccgctgcccgagctgcgcaccggtgcc
gaacgcatctggagcatgccgaagcattgtccggtctgtggcgcgccgctggtgcggcct
gaaggcgaagctgccacctactgcgtcaacaacgcctgtccggcgcaactggtgcgcgcc
gtggagcatttcgtgagccgccaggcgatggatatcgctggcttcggcattcgccaggcg
gaactcttcgtcgagcgcggcttcattcgcgacctggccgacatctatcaattgccatgg
gacgagattcgcaagctggagggctatggcgacaagcgcgtcgaaaatctgcgcgctgcc
gttgaagccagcaaagaccgccccatccatcgcctgttgaccggcctcggcattcgctat
gttggcgccgtggtggcagagctgttgacacagcattatcatagcctctttgatttgatg
aatgcctccccggaggaactgagcgccatcgaaggcatcggccccaagatcgccgccagc
attcacgactacttttccgtgccggcgaatcgggccctgctcgaaaagtttgcccgcctg
ggcgtgcgcgtggcagaaaggccgccggcgccggtcgagcaggccgccatgcagccgctg
gccggcctcacctttgttgtcacgggaacgctccccggctttacgcgcacagaagtcgag
gaattcatcaaggcacatggcggcaaagtggcaggcagcgtcagcagcaagacaagctac
gtcgtcgccggcgaggctgcaggcagcaagctggccaaagcccagcagctcggcgtaccg
gtgatcgacgaggcgacactgcgggcgatggcagagggcaggaggtga
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