KEGG   Capnocytophaga endodontalis: CBG49_08905
Entry
CBG49_08905       CDS       T04940                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
capn  Capnocytophaga endodontalis
Pathway
capn03030  DNA replication
capn03410  Base excision repair
capn03420  Nucleotide excision repair
capn03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:capn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CBG49_08905
   03410 Base excision repair
    CBG49_08905
   03420 Nucleotide excision repair
    CBG49_08905
   03430 Mismatch repair
    CBG49_08905
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:capn03032]
    CBG49_08905
   03400 DNA repair and recombination proteins [BR:capn03400]
    CBG49_08905
Enzymes [BR:capn01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     CBG49_08905
DNA replication proteins [BR:capn03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CBG49_08905
DNA repair and recombination proteins [BR:capn03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     CBG49_08905
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CBG49_08905
   MMR (mismatch excision repair)
    DNA ligase
     CBG49_08905
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CBG49_08905
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD BRCT_2 PTCB-BRCT Auto_anti-p27 HHH TF_Zn_Ribbon RNA_pol_A_CTD zf-NADH-PPase
Other DBs
NCBI-ProteinID: ASF43184
UniProt: A0A1Z4BPF9
LinkDB
Position
1994475..1996466
AA seq 663 aa
MKEKIQQLREELNEHNYNYYVLDNPTISDYEFDQKLKELQALEQAYPEFYDENSPTVRVG
GSVTKSFPTVVHEYRMYSLDNSYSKEDLEEWEQRIIKTLGNDQINFTCELKYDGASIDLL
YENGKLKQATTRGDGIQGDDITANVRTIRSVPLQLKGDYSERFYIRGEIVMPKKAFENLN
KERIAAGEDPFMNPRNTASGSLKLQDTAEVAKRGLDCLLYFLVGNTGIKSQFESLEKARE
WGFKVPNISKLCHSTAEVMDFINEWDTKRHTLPYETDGVVVKVDSIAQQEELGYTSKSPR
WAMAYKFKAEQVDTVLESISYQVGRTGAITPVANLKPVLLAGTVVKRASLHNADQIEKLD
IRIGDSVYVEKGGEIIPKIVGVNLDKREADAQPVQYITHCPECGTELVRNEGEAQHYCPN
AYGCPPQITGKIQHFISRKAMDIEGLGEETVEQLFRAGIIHTYADLYEVTVEKLLPLERM
AQKSAENIVKGIQKSKEIPFERVLFALGIRYVGETVAKKLARHYKTIEALENATVEQLVE
VDEIGNQIATSVVNFFADDYNRKLIDRLKGYGLQFSINEQATEGQTDTLKGLTFVVSGVF
HLYSRDELKALIEQHGGKVGSSISSKTNYVIIGDNMGPSKKEKAEQLGVKMISEEEFQSL
IIS
NT seq 1992 nt   +upstreamnt  +downstreamnt
atgaaagaaaagatacaacaacttcgggaggaactcaatgagcacaattataactactat
gtgctggacaatcctacgatttcggattatgagttcgaccaaaagcttaaagaactacaa
gccttagagcaagcatacccagagttttacgatgagaattcgcctactgtacgcgtggga
ggttctgttactaaaagttttccaaccgtagtacacgaataccgtatgtactcgttagat
aactcttattctaaggaagacttagaggaatgggaacagcgtattatcaagacgttgggc
aatgaccaaattaactttacttgcgaattgaaatacgacggtgcttctatagatttgttg
tacgaaaacggcaaacttaaacaagctactactcgtggcgatggtattcaaggtgacgat
attaccgccaatgtgcgtacgattcgttcagtacccttgcaactaaaaggcgattactct
gaacgtttttacattcgcggggagatagtaatgcctaaaaaagcctttgaaaacctcaat
aaggaacgtatagcagctggtgaagacccttttatgaatcctcgtaacaccgccagcggt
agtctcaaattgcaagatactgccgaggttgctaaacgaggtttggattgcttgttgtac
tttttggtagggaacacaggtataaagagtcagtttgagagtttagaaaaagcgcgcgaa
tggggctttaaagtacctaatatttccaaattgtgccattctactgccgaagttatggac
tttatcaatgaatgggataccaaacgccacactttgccttatgaaactgatggggtagtg
gtaaaggtagatagtattgcccagcaagaagagttaggatatacttcaaaatcgccgcgt
tgggcaatggcttacaagttcaaagcagaacaagtagacactgttttagagagtatttcc
taccaagtgggacgtacaggagctattactccggtggcaaatctcaaacccgtgttatta
gcgggaaccgtagtaaaacgggcttcattgcataatgctgaccagattgaaaagctcgat
attcgcataggcgactcggtatatgtagaaaaaggcggggagattatccctaaaattgta
ggcgtgaacttagataagcgcgaagcagatgctcagcccgtgcaatatatcacccattgt
cctgaatgtggtactgaattggttcgtaacgaaggcgaagcacaacactactgtcctaat
gcttatggctgtccgccccagattacaggtaagattcagcattttatctcacgcaaggca
atggatatagaaggcttaggtgaagaaacagtagaacaactcttccgtgccggtattatc
catacttatgctgacctctacgaggtaaccgtagagaaattgcttcccttagagcgtatg
gcacaaaagagtgctgagaatattgttaaaggtattcagaaatcaaaagaaatacctttt
gaacgcgtgctttttgctttggggattaggtatgtaggagagactgttgccaagaagctg
gcacgccactacaaaacgattgaagccctagaaaatgccactgtcgaacagttggtggag
gtagatgaaataggcaaccaaatagctaccagtgtagtaaatttctttgcagacgactat
aatcgtaaactcatcgataggctcaaaggctatggcttgcagttttcgattaatgaacaa
gccaccgaaggacaaacagatacccttaaaggacttacttttgtagtttctggagtcttt
cacttatattctcgcgatgaactcaaagccctcattgaacaacacgggggtaaagtaggg
tcatctatctcatcaaaaactaattacgtgataataggcgataatatgggacctagcaaa
aaagagaaagctgaacaattaggagtgaaaatgattagtgaagaagaatttcaatcgtta
ataatcagttaa

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