Capnocytophaga endodontalis: CBG49_08905
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Entry
CBG49_08905 CDS
T04940
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
capn
Capnocytophaga endodontalis
Pathway
capn03030
DNA replication
capn03410
Base excision repair
capn03420
Nucleotide excision repair
capn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
capn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CBG49_08905
03410 Base excision repair
CBG49_08905
03420 Nucleotide excision repair
CBG49_08905
03430 Mismatch repair
CBG49_08905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
capn03032
]
CBG49_08905
03400 DNA repair and recombination proteins [BR:
capn03400
]
CBG49_08905
Enzymes [BR:
capn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CBG49_08905
DNA replication proteins [BR:
capn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CBG49_08905
DNA repair and recombination proteins [BR:
capn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CBG49_08905
NER (nucleotide excision repair)
GGR (global genome repair) factors
CBG49_08905
MMR (mismatch excision repair)
DNA ligase
CBG49_08905
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CBG49_08905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
BRCT_2
PTCB-BRCT
Auto_anti-p27
HHH
TF_Zn_Ribbon
RNA_pol_A_CTD
zf-NADH-PPase
Motif
Other DBs
NCBI-ProteinID:
ASF43184
UniProt:
A0A1Z4BPF9
LinkDB
All DBs
Position
1994475..1996466
Genome browser
AA seq
663 aa
AA seq
DB search
MKEKIQQLREELNEHNYNYYVLDNPTISDYEFDQKLKELQALEQAYPEFYDENSPTVRVG
GSVTKSFPTVVHEYRMYSLDNSYSKEDLEEWEQRIIKTLGNDQINFTCELKYDGASIDLL
YENGKLKQATTRGDGIQGDDITANVRTIRSVPLQLKGDYSERFYIRGEIVMPKKAFENLN
KERIAAGEDPFMNPRNTASGSLKLQDTAEVAKRGLDCLLYFLVGNTGIKSQFESLEKARE
WGFKVPNISKLCHSTAEVMDFINEWDTKRHTLPYETDGVVVKVDSIAQQEELGYTSKSPR
WAMAYKFKAEQVDTVLESISYQVGRTGAITPVANLKPVLLAGTVVKRASLHNADQIEKLD
IRIGDSVYVEKGGEIIPKIVGVNLDKREADAQPVQYITHCPECGTELVRNEGEAQHYCPN
AYGCPPQITGKIQHFISRKAMDIEGLGEETVEQLFRAGIIHTYADLYEVTVEKLLPLERM
AQKSAENIVKGIQKSKEIPFERVLFALGIRYVGETVAKKLARHYKTIEALENATVEQLVE
VDEIGNQIATSVVNFFADDYNRKLIDRLKGYGLQFSINEQATEGQTDTLKGLTFVVSGVF
HLYSRDELKALIEQHGGKVGSSISSKTNYVIIGDNMGPSKKEKAEQLGVKMISEEEFQSL
IIS
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaaagatacaacaacttcgggaggaactcaatgagcacaattataactactat
gtgctggacaatcctacgatttcggattatgagttcgaccaaaagcttaaagaactacaa
gccttagagcaagcatacccagagttttacgatgagaattcgcctactgtacgcgtggga
ggttctgttactaaaagttttccaaccgtagtacacgaataccgtatgtactcgttagat
aactcttattctaaggaagacttagaggaatgggaacagcgtattatcaagacgttgggc
aatgaccaaattaactttacttgcgaattgaaatacgacggtgcttctatagatttgttg
tacgaaaacggcaaacttaaacaagctactactcgtggcgatggtattcaaggtgacgat
attaccgccaatgtgcgtacgattcgttcagtacccttgcaactaaaaggcgattactct
gaacgtttttacattcgcggggagatagtaatgcctaaaaaagcctttgaaaacctcaat
aaggaacgtatagcagctggtgaagacccttttatgaatcctcgtaacaccgccagcggt
agtctcaaattgcaagatactgccgaggttgctaaacgaggtttggattgcttgttgtac
tttttggtagggaacacaggtataaagagtcagtttgagagtttagaaaaagcgcgcgaa
tggggctttaaagtacctaatatttccaaattgtgccattctactgccgaagttatggac
tttatcaatgaatgggataccaaacgccacactttgccttatgaaactgatggggtagtg
gtaaaggtagatagtattgcccagcaagaagagttaggatatacttcaaaatcgccgcgt
tgggcaatggcttacaagttcaaagcagaacaagtagacactgttttagagagtatttcc
taccaagtgggacgtacaggagctattactccggtggcaaatctcaaacccgtgttatta
gcgggaaccgtagtaaaacgggcttcattgcataatgctgaccagattgaaaagctcgat
attcgcataggcgactcggtatatgtagaaaaaggcggggagattatccctaaaattgta
ggcgtgaacttagataagcgcgaagcagatgctcagcccgtgcaatatatcacccattgt
cctgaatgtggtactgaattggttcgtaacgaaggcgaagcacaacactactgtcctaat
gcttatggctgtccgccccagattacaggtaagattcagcattttatctcacgcaaggca
atggatatagaaggcttaggtgaagaaacagtagaacaactcttccgtgccggtattatc
catacttatgctgacctctacgaggtaaccgtagagaaattgcttcccttagagcgtatg
gcacaaaagagtgctgagaatattgttaaaggtattcagaaatcaaaagaaatacctttt
gaacgcgtgctttttgctttggggattaggtatgtaggagagactgttgccaagaagctg
gcacgccactacaaaacgattgaagccctagaaaatgccactgtcgaacagttggtggag
gtagatgaaataggcaaccaaatagctaccagtgtagtaaatttctttgcagacgactat
aatcgtaaactcatcgataggctcaaaggctatggcttgcagttttcgattaatgaacaa
gccaccgaaggacaaacagatacccttaaaggacttacttttgtagtttctggagtcttt
cacttatattctcgcgatgaactcaaagccctcattgaacaacacgggggtaaagtaggg
tcatctatctcatcaaaaactaattacgtgataataggcgataatatgggacctagcaaa
aaagagaaagctgaacaattaggagtgaaaatgattagtgaagaagaatttcaatcgtta
ataatcagttaa
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