Capnocytophaga sp. oral taxon 902: HW278_09985
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Entry
HW278_09985 CDS
T08773
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
capo
Capnocytophaga sp. oral taxon 902
Pathway
capo03030
DNA replication
capo03410
Base excision repair
capo03420
Nucleotide excision repair
capo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
capo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HW278_09985 (ligA)
03410 Base excision repair
HW278_09985 (ligA)
03420 Nucleotide excision repair
HW278_09985 (ligA)
03430 Mismatch repair
HW278_09985 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
capo03032
]
HW278_09985 (ligA)
03400 DNA repair and recombination proteins [BR:
capo03400
]
HW278_09985 (ligA)
Enzymes [BR:
capo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HW278_09985 (ligA)
DNA replication proteins [BR:
capo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HW278_09985 (ligA)
DNA repair and recombination proteins [BR:
capo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HW278_09985 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HW278_09985 (ligA)
MMR (mismatch excision repair)
DNA ligase
HW278_09985 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HW278_09985 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
BRCT_2
PTCB-BRCT
HHH
Auto_anti-p27
TF_Zn_Ribbon
RNA_pol_A_CTD
zf-NADH-PPase
Motif
Other DBs
NCBI-ProteinID:
QLF50992
UniProt:
A0A7H8YV48
LinkDB
All DBs
Position
2331633..2333621
Genome browser
AA seq
662 aa
AA seq
DB search
MKEKIQQLREELNEHNYNYYVLDNPTISDYEFDQKLKELQALEQAYPEFYDENSPTVRVG
GSVTKSFPTVVHEYRMYSLDNSYSKEDLEEWEQRIIKTLGSDQINFTCELKYDGASIDLL
YENGKLKQATTRGDGIQGDDITANVRTIRSVPLQLKGDYPERFYIRGEIVMPKKAFENLN
KERIAAGEDPFMNPRNTASGSLKLQDTAEVAKRGLDCLLYFLVGNTGIKSQFESLEKARE
WGFKVPNISKLCHSTAEVMDFINEWDTKRHTLPYETDGVVVKVDSIAQQEELGYTSKSPR
WAMAYKFKAEQVDTVLESISYQVGRTGAITPVANLKPVLLAGTVVKRASLHNADQIEKLD
IRIGDSVYVEKGGEIIPKIVGVNLDKREADAQPVKYITHCPECGTELVRNEGEAQHYCPN
AYGCPPQITGKIQHFISRKAMDIEGLGEETVEQLFRAGIIHTYADLYEVTVEKLLPLERM
AQKSAENIVKGIQKSKEIPFERVLFALGIRYVGETVAKKLARHYKTIEALENATVEQLVE
VDEIGNQIASSIVNFFADDYNRQLIDRLKGYGLQFSINEQATEGQTDALKGLTFVVSGVF
HLYSREELKALIEQHGGKVGSSISSKTNYVIVGDNMGPSKKEKAEQLGVKMISEEEFNAM
IL
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaaagatacaacaacttcgggaggaactcaatgagcacaattataactactat
gtgctggacaatcctacgatttcggattatgagttcgaccaaaagcttaaagaactacaa
gccttagagcaagcatacccagagttttacgatgagaattcgcctactgtacgcgtggga
ggttctgttactaaaagttttccaaccgtagtacacgaataccgtatgtactcattagat
aactcttattctaaggaagacttagaggaatgggaacagcgtattatcaagacgttgggc
agtgaccaaattaactttacttgcgaactgaaatacgacggtgcttctatagatttgttg
tacgaaaacggtaagcttaaacaagctactactcgtggcgatggtattcaaggtgacgat
attaccgccaatgtgcgtacgattcgttcagtacccttgcaactaaaaggcgattaccct
gaacgtttttacattcgcggggagatagtaatgcctaaaaaagcctttgaaaacctcaat
aaggaacgtatagcagctggcgaagacccttttatgaaccctcgtaacaccgccagcggt
agtctcaaattgcaagatactgccgaggttgctaaacgaggtttggattgcttgttgtac
tttttggtagggaacacaggtataaagagtcagtttgagagtttagaaaaagcgcgtgaa
tggggctttaaagtacctaatatttccaaattgtgccattctactgccgaagtgatggac
tttatcaacgaatgggataccaaacgccacactttgccttatgaaactgatggagtagtg
gtaaaagtagatagtattgcccagcaagaagagttggggtatacttcaaaatcaccgcgt
tgggcaatggcttacaagttcaaagcagaacaagtagacactgttttagagagtatttcc
taccaagtgggacgtacgggagctattactccggtggcaaatctcaaacccgtgttgcta
gcgggaaccgtagtaaaacgggcttcattgcataatgctgaccagattgaaaagcttgat
attcgtataggcgactcggtatatgtagaaaaaggcggggagattatccctaaaattgta
ggcgtgaacttagataagcgcgaagcagatgctcagcccgtgaaatatatcacccattgt
cctgaatgtggtactgaattggtgcgtaacgaaggcgaagcgcaacactactgtcctaat
gcttatggctgtccgccccagattacaggtaagattcagcattttatctcacgcaaagca
atggatatagaaggcttaggtgaagaaacagtagaacaactcttccgtgccggtattatc
catacttatgctgacctctatgaggtaaccgtagagaaattgctccccttagagcgtatg
gcacaaaagagtgctgagaatattgttaaaggtattcagaaatcaaaagaaatacctttt
gaacgcgtgctttttgctttgggaattaggtatgtaggagagactgttgccaagaaactg
gcacgccactacaaaacgattgaagccctagaaaatgccactgtcgaacagttggtggaa
gtagatgaaatagggaaccaaatagctagcagtatagtaaacttcttcgctgatgattac
aaccgtcaactcatcgataggctcaaaggctatggcttgcagttttcgattaatgaacaa
gccaccgaaggtcaaactgatgccctcaaagggcttacctttgtggtctctggggtcttt
cacttgtattcacgggaggaactcaaagcccttattgaacaacacggaggtaaagtaggg
tcgtctatctcttctaaaactaattacgtgatagtaggcgataatatgggaccaagtaag
aaagaaaaagccgagcaattaggtgtgaagatgattagtgaagaagaatttaatgcaatg
attttgtaa
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integrated database retrieval system
