Corynebacterium appendicis: CAPP_05045
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Entry
CAPP_05045 CDS
T09384
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
capp
Corynebacterium appendicis
Pathway
capp03030
DNA replication
capp03410
Base excision repair
capp03420
Nucleotide excision repair
capp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
capp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CAPP_05045 (ligA)
03410 Base excision repair
CAPP_05045 (ligA)
03420 Nucleotide excision repair
CAPP_05045 (ligA)
03430 Mismatch repair
CAPP_05045 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
capp03032
]
CAPP_05045 (ligA)
03400 DNA repair and recombination proteins [BR:
capp03400
]
CAPP_05045 (ligA)
Enzymes [BR:
capp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CAPP_05045 (ligA)
DNA replication proteins [BR:
capp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CAPP_05045 (ligA)
DNA repair and recombination proteins [BR:
capp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CAPP_05045 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CAPP_05045 (ligA)
MMR (mismatch excision repair)
DNA ligase
CAPP_05045 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CAPP_05045 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
WJY60934
LinkDB
All DBs
Position
994818..996863
Genome browser
AA seq
681 aa
AA seq
DB search
MTENNAPATDGTVDKDLLRKWTDLAKEVRHHRDLYYNGDPVITDAEFDEMFRALQKLEEE
HPELAVPDSPTKEVGAPTENTAFADVEHLEPMTSLDNVFSAEELAEWLAKTPGPYLTELK
IDGLSIDLVYENGALVRAATRGDGRVGEDITANAKVIEDIPHELTGDVPALVEVRGEVFI
RPEDFPELNELRQKEGGRPFANPRNTAAGGLRQKDPEAVRKRKLRMICHGIGAREGVEFD
SQHDAYEKLASWGLPVSEYTKRAETAEEVQDAVSYWADHRHDAIHEMDGVVIKVDDIAEQ
RQLGFTSRAPRWAIAYKYPPEEVTTKLLDIEVSIGRTGRATPYAVMEPVFVSGSTVSMAT
LHNQTEVKRKGVLIGDTVVVRKAGEIIPEVLGPVADLRDGTEREFVFPKDCPACGTELAP
AKEGDADWRCPNTRSCPAQLGARLEYIASRGAFDIEALGEKGAHDLIASGVLIDESTLFS
LSSDDLEKSSTYTRKDGQINASGKKLLNNLQERKATDLWRVLVALSIRHVGPTAARALAA
RYTSMDALRAASVEELAETDGVGTIIAESFKDWFEVDWHVEIVDKWAAAGVTMEDSAEDA
APQTLEGLTVVVTGTLENFSRDSAKEAILSRGGKASGSVSKKTDYVVVGENAGSKEQKAR
DLGITILDEAQFEQLLETGEA
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
gtgactgagaacaacgcccctgcgaccgacggcactgtggacaaggacctgctgcgtaag
tggacggacttggccaaggaggtccggcaccaccgggacctgtactacaacggcgacccg
gtgatcaccgacgcggaattcgacgagatgttccgcgcgctgcagaaactcgaggaggaa
catccggagctggcggtgccggattcgccgaccaaagaagtgggcgcaccgacggaaaat
acagcgttcgcggacgtggagcacctcgagccgatgacgagcttggataacgtgttctca
gccgaagagctcgcggaatggttagcgaagacgccggggccgtacctgacggagctgaag
atcgacgggctgtctatcgacctcgtgtacgagaacggcgcactcgtgcgtgccgcgact
cgcggcgacggccgcgtgggcgaggacatcacggccaacgcgaaggtcatcgaggacatc
ccgcacgagctgacaggcgacgtacctgctctcgtggaggtccgcggcgaagtgttcatc
cgcccggaggacttcccggagctcaacgagctgcgccaaaaagagggcggcagaccgttc
gcgaacccgcgcaacacggccgccggcgggttgcggcagaaggacccggaggccgtgcgc
aagcgcaagctgcgcatgatctgccacggcatcggcgcgcgtgagggagtcgagttcgac
tcgcagcacgacgcgtacgagaagctcgcctcgtggggcctgccggtcagcgaatacacg
aagcgcgcagagaccgccgaagaggtccaggacgcggtgagctactgggcggaccaccgc
cacgacgccatccacgagatggacggcgtggttatcaaggtcgacgacatcgcggagcag
cgccagctcggcttcacctcgcgtgcgccacgttgggcgattgcgtacaagtacccgccg
gaggaagtgaccacgaagctgctggatatcgaggtctccatcgggcgcacgggccgcgcg
acgccgtatgcggtcatggagccggtgttcgtctccggttcgacggtctcgatggccacg
ctccacaaccagacggaggtcaagcgcaagggcgtgctcatcggtgacacggtcgttgtg
cgcaaggccggcgagatcatcccggaggtgctgggccccgtcgcggatctgcgcgacggc
accgagcgcgaattcgtcttcccgaaggactgcccggcgtgcggcacggagctcgcaccc
gcgaaggaaggcgacgcggactggcgttgcccgaacacccgctcgtgtccggcgcagctc
ggcgcgcggctggagtacatcgcctcgcgcggcgcattcgacatcgaagcactcggtgaa
aagggcgcgcacgacctcatcgcttcaggcgtgcttatcgacgaatccacccttttctcg
ctgtcctccgacgacttagaaaagtcgtctacgtacacgagaaaagacgggcagatcaat
gcgtcgggcaagaagctgctgaataacttgcaggagcgcaaagctaccgacttgtggcgg
gtgctcgtcgcgttgtccatccgccacgtgggtcccaccgcagcccgcgcgttggctgcg
cgctacacatccatggacgcgctacgcgcagcctcagtggaggaactggcagagaccgac
ggtgtgggcacgatcatcgcagagtccttcaaggactggttcgaggtcgactggcacgtg
gagatcgtcgacaagtgggccgctgccggcgtgaccatggaggattccgcggaagacgcg
gcaccccaaacgcttgagggcctgaccgtcgtggtcaccggcacgctggagaacttctcc
cgcgacagcgccaaggaagcgatcctgtcgcgcggcggaaaggcgtcgggttcagtgtcg
aaaaagaccgactacgtcgtcgtcggcgagaatgccggttccaaggaacaaaaggcgcgc
gacctaggcatcacgattttggacgaggcccagttcgagcagcttctggaaaccggcgag
gcttag
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integrated database retrieval system
