Capnocytophaga sp. H2931: CGC52_04010
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Entry
CGC52_04010 CDS
T05889
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
capq
Capnocytophaga sp. H2931
Pathway
capq03030
DNA replication
capq03410
Base excision repair
capq03420
Nucleotide excision repair
capq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
capq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CGC52_04010
03410 Base excision repair
CGC52_04010
03420 Nucleotide excision repair
CGC52_04010
03430 Mismatch repair
CGC52_04010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
capq03032
]
CGC52_04010
03400 DNA repair and recombination proteins [BR:
capq03400
]
CGC52_04010
Enzymes [BR:
capq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CGC52_04010
DNA replication proteins [BR:
capq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CGC52_04010
DNA repair and recombination proteins [BR:
capq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CGC52_04010
NER (nucleotide excision repair)
GGR (global genome repair) factors
CGC52_04010
MMR (mismatch excision repair)
DNA ligase
CGC52_04010
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CGC52_04010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
TF_Zn_Ribbon
HHH
TPD
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
ATA74673
LinkDB
All DBs
Position
complement(948517..950508)
Genome browser
AA seq
663 aa
AA seq
DB search
MDVKNQIEQLRNELNQHNYNYYVLDNPIISDYEFDQKLKELQLLENQHPEFFDSNSPTVR
VGGTITKNFNTITHEFRMYSLDNSYSKEDLEEWEKRIIKLLGSQNLSFTCELKYDGASVD
LLYEKGKLTQATTRGDGFQGDEITANVRTIKSVPLVLQNDFPERFHIRGEIILPKKGFEE
MNKERIEAGEDPYMNPRNTASGSLKLQDTSEVAKRPLDCLLYALVGSVNIKTQYEGLEKA
RSWGFKVPKESKLCHSTDEVMDFINYWDVHRHDLPYEIDGVVVKVNDIALQEELGYTSKS
PRWAMAYKFKAEQATTTLESISYQVGRTGAITPVANLTPVLLAGTIVKRASLHNADQIEK
LDIRVGDTVFVEKGGEIIPKIVGVALDKRPSGSMITTYISHCPECQSELIRNEGEAQHYC
PNVEGCPPQITGRIQHYISRKAMDIEGLGGETIELLFRSKLIENYADLYELTVSKLLPLE
RMASKSAENIIKGIEKSKEVPFERVLFALGIRYVGETVAKKLARHYKTIDNLEKTTLEEL
MQVDEIGVRIAESVVQFFDNEQNKNIVKRLKSYNLQFSLSEESLANQTEKLKGFTFVVSG
VFHLHSRDELKNIIEQNGGKVGSSISSKTSYVIVGDNMGPSKKQKAESLGIPMISEEDFI
KML
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atggacgtcaaaaatcaaatagaacagcttagaaacgaacttaatcagcataattataat
tattatgtattggacaatccaattatttctgattacgagtttgatcaaaaattgaaggaa
ttacagttgttagaaaatcaacatcctgaattcttcgattctaattcgccaacagttcgt
gtgggtgggactattactaaaaatttcaatactatcacacatgaatttcggatgtattct
ttggataattcttattcaaaagaagatttggaagagtgggaaaaacgtatcattaagcta
ttagggagtcagaacctctcttttacttgtgaattgaaatatgacggagcttcggttgat
ttgctttatgagaaagggaaactaacccaagctactacacgcggagatggttttcaaggc
gatgaaattactgcaaatgtacgtacaattaagagcgtaccgttggttttgcaaaacgat
ttcccagagcgtttccatattcgtggagaaattatcttacctaaaaaaggatttgaagaa
atgaataaagaacgtatcgaagcaggggaagatccttacatgaaccctcggaatacggca
agtggcagtctgaaattgcaggatacctctgaagtagcgaaacgcccattggattgttta
ctgtatgcattagttggtagtgtaaatataaaaacacaatatgaaggtttggaaaaggct
cgttcctggggttttaaagttcccaaagaatcaaaattatgtcattccaccgatgaggta
atggactttattaactattgggatgtacaccgccatgatttgccatatgaaattgacggt
gtggtggtcaaggtcaacgatatagctctgcaagaagagttgggatacacctcaaaatca
ccacgttgggcaatggcatataaatttaaggctgaacaagcgacaactaccttagaaagt
atttcgtaccaagtcgggcggacaggagccattactcctgtagcaaatctcacccctgta
ttgttggcgggaactatcgtaaaacgagcatccttgcacaatgccgaccaaatagaaaag
ttagatattcgtgtcggagatacggtttttgtagaaaaaggcggtgaaatcattccgaaa
atcgtaggagtagcgcttgataagcgtccctcaggctctatgataacaacttatatttca
cattgtcctgaatgtcagtctgaattgatacgtaacgaaggtgaagcacagcactattgc
cctaatgttgaaggttgtcctcctcaaattacaggcagaattcaacattacatctcgcgt
aaagccatggatatcgaaggtttaggtggagaaactatagagttgctatttcgttcaaaa
ctaattgagaattacgcagatttgtatgagcttacagtatcaaaacttttgccattggaa
cgaatggcatccaaaagtgctgaaaatattatcaagggtatagaaaaatcaaaagaagtt
ccttttgagcgagtgctttttgctttaggaatccgttacgtgggtgaaacggtggctaaa
aaattggctcggcactataaaacgattgataacttagaaaaaaccacactcgaagaactt
atgcaagtagatgaaataggtgttcgcatagctgaaagtgtagttcaattttttgacaat
gaacagaataaaaatattgtcaaacgactaaaatcctataatttacaattttcattatct
gaagaaagtctggcaaatcaaactgaaaagcttaaaggattcacgtttgtggtttcaggg
gtatttcatttacattctcgtgatgagttgaaaaacatcattgaacaaaatggaggaaag
gtaggttcgtcaatttcttctaaaacaagctatgtgattgtgggtgacaacatggggcca
agtaaaaagcagaaagctgaaagtttaggcattccgatgatcagtgaagaggatttcata
aaaatgctttag
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