Corynebacterium aquatimens: CAQUA_06775
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Entry
CAQUA_06775 CDS
T09232
Symbol
ligA2
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
caqm
Corynebacterium aquatimens
Pathway
caqm03030
DNA replication
caqm03410
Base excision repair
caqm03420
Nucleotide excision repair
caqm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
caqm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CAQUA_06775 (ligA2)
03410 Base excision repair
CAQUA_06775 (ligA2)
03420 Nucleotide excision repair
CAQUA_06775 (ligA2)
03430 Mismatch repair
CAQUA_06775 (ligA2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
caqm03032
]
CAQUA_06775 (ligA2)
03400 DNA repair and recombination proteins [BR:
caqm03400
]
CAQUA_06775 (ligA2)
Enzymes [BR:
caqm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CAQUA_06775 (ligA2)
DNA replication proteins [BR:
caqm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CAQUA_06775 (ligA2)
DNA repair and recombination proteins [BR:
caqm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CAQUA_06775 (ligA2)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CAQUA_06775 (ligA2)
MMR (mismatch excision repair)
DNA ligase
CAQUA_06775 (ligA2)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CAQUA_06775 (ligA2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
Gp45_2
HHH
Dsc3_N
Motif
Other DBs
NCBI-ProteinID:
WJY66056
LinkDB
All DBs
Position
complement(1470625..1472649)
Genome browser
AA seq
674 aa
AA seq
DB search
MTTNSVSKDLQRQWTELAKEVRHHRDLYYNGNPVITDAEFDDLFRRLQELEATHPELAVP
DSPTMEVGAPVSSSFANVEHLVPMTSLDNAFSAEELADWLAKAPGPYLTELKIDGVSIDL
IYENGTLTRAATRGDGRVGEDITENARVIKDIPHQLTGDFPPLLEVRGEVFIRPEDFPEL
NELRQAEGGKPFANPRNTAAGGLRQKNPKDVEKRKLRMICHGIGAREGLELSSQHEAYET
LASFGLPVSEYTRRAETAEEVHEAVNYWADHRHDAIHEMDGLVVKVDDLAEQRRLGFTSR
APRWAIAYKYPPEEVTTKLKDIAVSVGRTGRATPFAILEPVFVSGSTVSMATLHNQHEVK
RKGVMIGDTVVVRKAGEIIPEVLGPVADLRDGSEREFVYPSDCPVCGTPLAPAKEGDADW
RCPNTRSCPAQLAARLEYIASRGAFDIEALGEKGAQDLIESGVLIDEGDLFALTTDDLKK
SSAYTRKDGQLNASGTKLLNNLDKAKQTDLWRVLVGLSIRHVGPTAARALAARYRSMNAL
LAATTEELAETDGVGQIIAESFTEWFEVDWHREIVDKWRAAGVTMEDDTSDAPEQTLEGL
TVVVTGTLENYSRDEAKEAILSRGGKAAGSVSKKTDYVVVGENAGSKAAKAEELGRPILT
EEQFEQLLQTGSLQ
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
gtgactacaaactctgtgagcaaagacctgcagcggcagtggactgagctggcgaaggag
gtccggcaccaccgggacctctactacaacggcaacccggtgatcacggacgcggagttc
gacgacctgtttcgccgtctccaggaattggaggcgacgcacccggagctcgcggtgccg
gattcgccgacgatggaggtcggcgcgccggttagctccagcttcgccaacgtggagcac
ctcgtgcccatgaccagtttggacaatgcgttcagtgcggaggaactcgccgactggctg
gccaaggcgccgggtccgtacctcacggagctcaagatcgacggcgtgtccatcgatctc
atctacgaaaacggcacgctcacccgcgcggccacgcgtggcgacggccgggtcggcgag
gacatcaccgagaacgcccgcgtcatcaaggacatcccgcaccagctcacaggcgatttc
ccgccgctgctcgaggtccgcggcgaggtcttcattcgccccgaagactttccggagctc
aatgagctgcgtcaggccgaaggcggcaaaccgtttgccaacccgcgcaatacagcggcg
gggggactgaggcagaagaatccgaaggacgtcgagaagcgaaagctccgcatgatttgc
cacggcattggcgcgcgcgagggcctggagctgtcgagccagcatgaggcgtatgagacg
ctggcgagcttcggcctgccggtcagcgaatacacgcggcgtgcggaaacggccgaggag
gtccatgaggcggtcaattattgggccgatcaccgccacgacgcgatccatgagatggat
ggtcttgtggtcaaggtcgatgacctcgcggagcagcgccgtctcggcttcacctcgcgc
gcgccgcgctgggcgatcgcgtacaagtacccgccggaagaggtcaccacgaagcttaaa
gacatcgcggtgtccgtcggccgcacgggccgcgccacgccgttcgccatccttgagccg
gtgtttgtttccggctcgacggtgtctatggcgacgttgcacaaccagcacgaggtcaag
cgcaagggcgtcatgatcggcgacaccgttgtggtccgcaaggccggcgaaatcatccct
gaggtcctaggccccgtcgctgacctgcgcgatggcagcgagcgcgagttcgtctacccc
tcagactgcccggtctgcggcacgccgctcgcccccgcgaaagagggcgacgcggattgg
cgttgccccaacacccgctcgtgccccgcgcagctggcagctcgcctggagtacatcgct
tcccgcggggctttcgacatcgaagcgttgggggagaagggtgcccaagacctcatcgaa
agcggcgtgcttatcgacgaaggggatctcttcgcattgaccaccgacgacctaaaaaag
tcctcggcgtacacgcgaaaagatgggcaactcaatgcttcgggcacaaagctcctcaac
aacctggataaagcgaagcagacagatttgtggcgcgtcctggtggggttgtcgatccgc
cacgttggtcccaccgcggcccgtgccctggcggcgcgctacaggtccatgaatgcgctg
ctggccgccaccacagaagagctcgccgaaacggacggcgttggccagatcatcgcggag
agttttacagagtggtttgaggttgattggcaccgggaaatcgtcgataagtggcgcgcg
gctggcgtgaccatggaagacgacacgtccgacgcgcctgagcaaacgcttgagggcctc
accgtcgtggtgaccggcaccttggagaactactcccgcgatgaggccaaagaggccatc
ctgtcgcgcggcggcaaggcggccgggtcggtgtcgaagaaaaccgactacgtcgtcgtc
ggtgaaaacgccggctccaaggccgcgaaggcggaggagttgggccggccgatccttacc
gaggagcagtttgagcagctgcttcagaccggttcgctgcagtag
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