Comamonas aquatica: KAQ61_06115
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Entry
KAQ61_06115 CDS
T07338
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
caqt
Comamonas aquatica
Pathway
caqt03030
DNA replication
caqt03410
Base excision repair
caqt03420
Nucleotide excision repair
caqt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
caqt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KAQ61_06115 (ligA)
03410 Base excision repair
KAQ61_06115 (ligA)
03420 Nucleotide excision repair
KAQ61_06115 (ligA)
03430 Mismatch repair
KAQ61_06115 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
caqt03032
]
KAQ61_06115 (ligA)
03400 DNA repair and recombination proteins [BR:
caqt03400
]
KAQ61_06115 (ligA)
Enzymes [BR:
caqt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KAQ61_06115 (ligA)
DNA replication proteins [BR:
caqt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KAQ61_06115 (ligA)
DNA repair and recombination proteins [BR:
caqt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KAQ61_06115 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KAQ61_06115 (ligA)
MMR (mismatch excision repair)
DNA ligase
KAQ61_06115 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KAQ61_06115 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
Nlig-Ia
BRCT_2
Zn_Ribbon_TF
5_3_exonuc
Zn_ribbon_PF0610
Motif
Other DBs
NCBI-ProteinID:
QTX22021
LinkDB
All DBs
Position
1294378..1296480
Genome browser
AA seq
700 aa
AA seq
DB search
MHDNLDLFGAPAPEQPAPVAPKTVVAKVQQLRAQLNQWAHEYYVLDAPSVPDGEYDRVFQ
QLQALEGAYPALQTPDSPTQRVIGAVLEGLKPVRHVVPMLSIRTETDNEASGAEAFDARI
RRELELDLAAPPVEYVAEPKFDGLAMSLRYEQGRLVHAVTRGDGEVGEDVTHNIRTIRQI
PLTLPDGVPPVLEVRGEVYMRRADFQALNARQEAAGGKLFANPRNAAAGSVRQLDSHIAM
QRPLSFFAYGVGEVTPPEQGGPVFSTHYGLLQQLRTWGFPVAAQVCIARGAPELVAFHAE
LGQQRASLPYEIDGVVYKVNSLALQRQLGFVTREPRWAVAHKYPAEEMPTVMEGIDVQVG
RTGKLTPVARLAPVSVGGVTVTNATLHNLFEIRKKRVRVGDTVIVRRAGDVIPEVVGKVP
GERPVYVPNFQMPQACPICGSEVVREPGEANHRCTGGLFCPAQRKEALLHFAARRAMDIE
GLGDKLVDQLVDGHVVRTLPDLYRLGLTALSSLDRMAEKSAQNVLAALEKSKSTTLNRFL
FGLGIRHVGEATAKDLARHFGTLDAIMDASVEQLLQVRDVGPVVAESIHTFFAQPHNREV
VEQLRACGVHWDEGAPAEKAPQVLAGKTVVLTGTLPTLGRDAAKELLEAAGAKVSGSVSK
KTSYVIAGAEAGSKLTKAQELGVPVLDEAGMLALLNATEN
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacaatctggacctttttggcgctccagcgcccgagcagcctgcgcctgttgct
cctaaaaccgttgttgccaaggtgcagcagctgcgtgcccagctgaaccagtgggcgcat
gaatactatgtgctggatgcgccctcggtgcccgacggggagtacgaccgcgtgttccag
cagctgcaggccctggaaggcgcctaccccgcgctgcagacgccggattcgcccacgcag
cgagtcatcggtgcggtgctggaggggttgaaaccggtgcgccacgtggtgcccatgctg
tccatccgcacggaaaccgacaacgaggcttcgggtgccgaggccttcgatgcacgcatc
cgccgcgagttggagctggacctggccgcgccgcccgtggagtacgtggccgagcccaag
ttcgacgggctggcgatgagcctgcgctacgagcagggccgcctggtgcacgccgtgacg
cgcggcgacggcgaggtgggcgaggacgtgacccacaacatccgcaccatccgccagatt
cccctgaccctgccggacggcgtgcccccggtgctggaagtgcgcggcgaggtctacatg
cgccgtgccgacttccaggcgttgaatgcgcgccaggaagccgccggcggcaagctgttt
gccaatccgcgcaatgcggcggcgggctcggtgcgccagctcgattcgcacatcgccatg
caacggccgttgtccttctttgcctacggcgtgggcgaggtgacgccgcccgagcaggga
ggaccggtgttcagcacccactatggcttgctgcagcagctgcgcacctggggttttccg
gtggcagcgcaggtctgcattgcgcggggtgctcctgaattggtggctttccatgccgag
ctgggccagcagcgtgccagcctgccgtatgaaatcgacggcgtggtctacaaggtcaac
agcctggccttgcagcgccagctgggctttgtgacgcgcgagccgcgctgggccgtggcg
cacaagtacccggccgaggaaatgcccaccgtcatggaaggcattgacgtgcaggtcggg
cgcaccggcaagctcacgcccgtggcgcggctggcaccggtcagtgtgggtggggtcacg
gtgaccaatgccacgctgcacaacctgtttgaaatccgcaagaagcgcgtgcgcgtgggc
gacaccgtcatcgtgcggcgcgccggcgatgtgatccccgaggtggtgggcaaggtgccc
ggcgagcgcccggtctacgtgcccaacttccagatgccccaggcctgcccgatctgtggc
tcggaggtggtgcgcgaacccggcgaggccaaccaccgctgcaccggcgggctgttctgc
ccggcccagcgcaaggaagccctcctgcactttgccgcgcgccgcgccatggacatcgaa
ggcctgggtgacaagctggtggaccagctggtggatggccatgtggtgcgcaccttgccg
gatttgtaccgcttgggcttgaccgcgctgtcttcgctggatcgcatggccgaaaaatcg
gcccaaaacgtactggcagcactggaaaaatccaagtccacgacgctgaaccgcttcctg
ttcggcctgggcatccgccatgtgggggaggccacggccaaggacctggcgcgccatttc
ggcacgctggacgccatcatggatgccagcgtcgagcagttgctgcaggtgcgtgacgtg
gggccggtggtggccgaaagcatccacaccttcttcgcccagccccacaaccgcgaggtg
gtggagcaattgcgcgcctgcggcgtgcactgggacgagggcgcaccggcggaaaaagcc
ccgcaggtgctggcgggcaagaccgtggtgctgaccggcaccctgcccaccctggggcgc
gatgccgccaaggagttgctggaggcggccggcgccaaggtcagcggctcggtcagcaag
aagaccagctatgtgatcgcaggggccgaggccggcagcaagctgaccaaggcccaggaa
ctgggcgtgccggtactggacgaagccggcatgctggcgctgctgaacgctacggagaac
tga
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