Corynebacterium aurimucosum: cauri_1106
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Entry
cauri_1106 CDS
T00887
Symbol
lig
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
car
Corynebacterium aurimucosum
Pathway
car03030
DNA replication
car03410
Base excision repair
car03420
Nucleotide excision repair
car03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
car00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
cauri_1106 (lig)
03410 Base excision repair
cauri_1106 (lig)
03420 Nucleotide excision repair
cauri_1106 (lig)
03430 Mismatch repair
cauri_1106 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
car03032
]
cauri_1106 (lig)
03400 DNA repair and recombination proteins [BR:
car03400
]
cauri_1106 (lig)
Enzymes [BR:
car01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
cauri_1106 (lig)
DNA replication proteins [BR:
car03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
cauri_1106 (lig)
DNA repair and recombination proteins [BR:
car03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
cauri_1106 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
cauri_1106 (lig)
MMR (mismatch excision repair)
DNA ligase
cauri_1106 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
cauri_1106 (lig)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
DUF8512
HHH
DZR_2
Motif
Other DBs
NCBI-ProteinID:
ACP32699
UniProt:
C3PFU5
LinkDB
All DBs
Position
1225952..1227976
Genome browser
AA seq
674 aa
AA seq
DB search
MSDAVDIQREWSELAQEVRKHRELYYNGEPSIPDADFDELFQRLLALEAEHPELQTPDSP
TQQVGAAPEGAVDIEHLERLYSLDNVFSAEELQDWLDRTPAEAYLTELKIDGLSIDLVYR
DGKLVTAATRGDGRVGEDITANARVIPDIPHELTGTDEYPVPSLVEVRGEVYMRPDEFEE
INAARREDGKPTFANPRNAAAGGLRMKDPEDVKKRRLHMVCHGIGARERFQPTSQHDAYK
ALEAWGFPVSPYTQRVTTAKEVQERVTYWEEHRHDAYFEMDGLVIKVDDLASQRALGATS
RAPRWAIAYKYPPEEVTTKLLNIEVGVGRTGRVTPFAIMEPVFVSGSTVSMATLHNQFEV
KNKNVLIGDTIIIRKAGEIIPEVLGPVLDKRDGSETEWVFPENCPACGTKLAPQKEGDQD
WRCPNTRSCPAQLAARLEYLASRKALDIGELGEKAAADLISSGVLEDEADLFDLDEQALL
KSSVYTTQKGALNASGKKLLENLKTARQAEFWRVLVALSIRHVGPIAARALATRFGSMEV
LRAASVEELADTDGVGTIIAESFKQWFEVDWHDNIVQKWTAAGVTMEEESSDKPAQTLEG
ITVVVTGTLENFTRDSAKEAIITRGGKASSSVSKKTNYVVVGENAGSKEQKARDLGLTIL
DEEGFTRLLETGEA
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgatgcagtagatatccaacgcgaatggtccgagcttgcccaggaagtgcgcaag
caccgcgagctgtactacaacggtgagccctcaatcccggatgcggactttgatgagctc
ttccagcgcttgctagcgcttgaggcggagcacccggagctgcagaccccggattcgccg
acccagcaggtgggcgcagccccggaaggtgccgtcgacatcgagcacttggagcgcctg
tacagcttggacaatgtttttagcgccgaggagctgcaggactggctggaccgcacgccg
gccgaggcttaccttactgagctgaagattgacggcctgtccattgacttggtctaccgc
gatggcaagcttgtcacggcagccacgcgcggtgatggtcgtgtgggcgaggacatcact
gccaatgcgcgcgttatccccgatatcccgcacgagctcactggcacggatgagtatccg
gttccctccctggtcgaggtccgcggcgaggtgtacatgcgcccggatgagttcgaggaa
attaacgctgcgcgccgcgaagacggcaagcccacttttgccaacccccgcaacgcggcg
gcaggcgggctgcgcatgaaggatccggaggacgtcaagaagcgtcggcttcacatggtc
tgtcacggtatcggcgcacgcgagaggttccagcccacctcgcaacacgatgcctataag
gccctcgaggcttggggcttcccggtctctccctatacccagcgggttaccaccgccaag
gaggttcaggagcgcgtgacttactgggaggagcaccgccacgacgcctactttgagatg
gacggtctcgtcatcaaggtcgatgatctggccagccagcgcgccttaggcgcgacttca
cgcgcgccgcgttgggccattgcctacaagtacccgccggaggaagtgaccaccaagctg
ctcaacattgaggtaggtgtgggacgtaccgggcgcgtgacgcctttcgccatcatggaa
ccagtctttgtctccggctcgacggtctccatggccaccctgcacaaccaattcgaggtc
aagaacaagaacgtcctcatcggggataccatcatcatccgcaaggctggagagatcatc
ccagaggtcttgggccccgttctggacaagcgcgatggcagcgagactgaatgggtcttc
ccagagaattgccctgcctgtggcacgaagctggcaccgcagaaggaaggcgaccaagac
tggcgctgcccgaatacccgcagctgtccggcgcagctcgccgcacgcttggagtacttg
gcctcccgcaaggcactcgacattggcgagctgggggagaaggctgctgcggatctgatt
tcctccggagtgctcgaggatgaggcggacctcttcgatctcgatgaacaagcactcctc
aaatcctcggtctacaccacgcagaagggcgcgctcaatgcctccggcaagaagctgctg
gagaacctcaagacggcccgccaggctgaattctggagggtgctcgtcgcgctgtcgatc
cgccacgtcggccccattgcggcgcgtgcactagccacccgctttggctccatggaagtg
ctacgcgcggcatcggtagaagagctagcggataccgatggcgtgggcaccatcatcgcg
gaatccttcaagcagtggttcgaggtggactggcacgacaatatcgtgcagaagtggacc
gctgccggggtgaccatggaggaagaatccagcgataagccggcgcaaacgcttgaaggc
atcaccgtggtggtgaccggtaccttggagaacttcacgcgcgattccgccaaggaggcc
attatcacccgcggcggaaaggcatccagctcggtgtcgaagaagacgaactacgtcgtg
gtcggggagaatgccggttccaaggaacagaaggcccgcgatctgggactgacaatcctg
gacgaagagggcttcacccgcctgctagaaacgggcgaggcatga
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