Coffea arabica (coffee): 113687957
Help
Entry
113687957 CDS
T11342
Name
(RefSeq) transcription factor PIF4-like isoform X1
KO
K16189
phytochrome-interacting factor
Organism
carb Coffea arabica (coffee)
Pathway
carb04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
113687957
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
carb03000
]
113687957
Transcription factors [BR:
carb03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
113687957
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HLH
bHLH_SAC51
bHLH_NPAS4
bHLH_LHW
Motif
Other DBs
NCBI-GeneID:
113687957
NCBI-ProteinID:
XP_027061311
UniProt:
A0A6P6S588
LinkDB
All DBs
Position
5e:532906..536693
Genome browser
AA seq
524 aa
AA seq
DB search
MNPCFPDWNFGAEFPEPILKNKPLGMDNELVELLWENGQIVLHPQSHHHHHPKPGTADQQ
ENQSRQINKHNHDQSMSRGSTGGGSCQNQVTSLIQDTETVSWIDDPFDKEFTSDFLSEFP
ISNPVEQGPHEDDKFKKFGISQDLHNHPVQLPNDKPSDVINSLPPRFHNFDSAQPNHSHL
PRAANAPLSAMADLRSSSDGVSNRTLGGEVREYSSAKTVGTSHCGSNLVVNDTDTSRVSS
GGIADHRGFSGAMAKDHRVGKMSSQSDRLQTDQTEETAITSSSSDGSETSFGRTCNQSTG
TNSHKRKSRDAEDSECQSKAAELESAARKKPAVKSGSSRKSRAAEVHNLSERRRRDRINE
KMRALQELLPKSNKTDKASMLDEAIEYMKSLQLQLQMMWMGSGMAPMMFPGVQHYMPRLG
MGIGPLAMPSIHSQMHLPRLPLLDQATIPNQAALCHQTTMFNPMNYHTQLQNSKLSEQYA
NYMAFHPLQNASQQLNVFGFGPNTAQQHNHSLAPSGNSNGPSVG
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atgaatccttgctttccggattggaattttggggctgaattcccagagcccattctgaag
aataagcccctgggaatggacaatgagctggtggagctgttgtgggaaaatggacaaatt
gtgctgcaccctcaatctcatcatcaccaccatcccaaaccagggacagctgatcaacaa
gaaaatcaatctaggcagattaacaaacacaaccatgatcaatcaatgagcagaggcagt
acagggggtggctcttgtcaaaatcaggttactagtttgattcaagatactgagacagtc
tcttggattgatgatccctttgacaaggaattcacctctgacttcttatctgaatttcca
atctccaatccagttgagcaaggtccacatgaggatgataagtttaaaaaatttggcata
tcacaagacctccacaaccatcctgtccagttacccaatgataaaccttctgatgtcatc
aactcattgcctccaagatttcacaactttgattctgctcagcccaatcattcccattta
ccaagagctgctaatgctcctttgtctgccatggcagatttgagatcctcaagtgatgga
gttagcaataggactttgggaggtgaagttagagagtattcttccgccaagacggttggc
accagccactgcggcagcaatctagtagtaaatgatactgatacaagccgagtttcgagt
ggtgggattgctgatcatagaggtttttcaggagctatggccaaggatcatcgtgttggg
aaaatgagctctcaaagtgacagacttcaaacagatcagacagaggaaacagcaattaca
tcatcttcttctgatggatctgagactagttttgggagaacatgtaaccaatcaactggt
accaattctcataagcggaaaagcagagatgcagaagattcagagtgccaaagtaaggct
gctgaattggagtcagctgccagaaagaaaccggcagtaaaatctgggagttcacgcaaa
agccgtgctgctgaagtccataatctctctgagaggagacggagagacaggatcaatgag
aagatgagggctttgcaggagctgcttcctaagtctaacaagacagataaagcatcgatg
ctagatgaagctatagaatacatgaaatcccttcagctacaacttcagatgatgtggatg
ggaagtggaatggcaccaatgatgtttcctggtgtccagcactacatgccccgcttaggg
atgggaataggcccactggcaatgccttccattcacagccagatgcatctcccaaggctg
ccgctgcttgatcaagcgacaataccaaatcaagctgcactatgccaccaaaccacaatg
ttcaatcccatgaattatcatactcagttgcagaattccaaattatctgagcaatatgcc
aattacatggcattccaccctctgcagaatgcatcacagcagttgaacgttttcggcttc
ggtcccaacacagcacaacaacataatcactcgttagccccatccggcaactcaaatgga
ccctctgtaggatga
DBGET
integrated database retrieval system
