Coffea arabica (coffee): 113688026
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Entry
113688026 CDS
T11342
Name
(RefSeq) DNA repair protein RAD16-like isoform X1
KO
K15083
DNA repair protein RAD16
Organism
carb Coffea arabica (coffee)
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
carb03400
]
113688026
DNA repair and recombination proteins [BR:
carb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NER4 complex
113688026
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
zf-RING_UBOX
zf-C3HC4_3
ResIII
zf-C3HC4
zf-C3HC4_2
zf-RING_5
Prok-RING_4
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
113688026
NCBI-ProteinID:
XP_027061405
UniProt:
A0A6P6S5H1
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All DBs
Position
5e:complement(42552659..42562703)
Genome browser
AA seq
916 aa
AA seq
DB search
MNLRSRASKGKDIVQYIESSDDDEQGRTDSSDSDIYIISDCEDEVCMHMLDEHEGKDIPD
INLEPTFEISDDDIQDNVSKRRKVGPVKMRGRRRNKNLDVVLVSVDRDRECNQMDTVFED
IADQSEKKSLKRKSKGHKRPILVWEALQHEIERWIKENEANDVDLSNQNEILAETVEPPA
NLIIPLLRYQKEWLAWALKQEESTTRGGILADEMGMGKTAQAIALVVAKQEIQKAISEPS
LVASAPSSSSTFPAVKGTLVICPLVAVVQWVSEIDRFTTKGSNKVLVYHGSHRGRNIDQF
SEYDFVITTYSIVEAEYRRNVMPPKHKCQWCGKLLYEHKMSVHLKYFCGPDAIKTAKLSK
QQRKKSNSKTTTSKQNLEFDEDDAFDSNGDMQKRGRKKGAKTSNGIGGSGNAFAYGIPAD
IGESSSTKKSILHSVKWERIILDEAHYIKDRRSSTTRAVFALQSLYKWALSGTPLQNRVG
ELYSLVRFLEIVPYSYYYCKDCDCRSLDYSTSTDCPHCPHKSVRHFCWWNRHVASPIKYA
GNLGEGRKAMLLLKHRILKSIVLRRTKKGRAADLALPPRIVTLRRDELDIKEEDYYTSLY
NESQAQFNTYIEANTLMNNYAHIFDLLTRLRQAVDHPYLVVYSSTAAGRGGSIRNAPSGE
VCGLCHENAEDAVVTSCTHVFCKSCLIDFSASMGQISCPSCAKLLTVDFTGNKENEDQMP
KTTIKGFRPSSILNRIRLDDFQTSTKIDALREEIRFMVERDGSAKGIVFSQFTSFLDLIH
YSLQKSGVSCVQLVGSMSMAARDAAIKKFTEDPDCRIFLMSLKAGGVALNLTVASHVFLM
DPWWNPAVERQAQDRIHRIGQFKPIRIVRFVIKDTVEERILKLQEKKELVFEGTVGGSSE
ALAKLTEADLRFLFLT
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atgaatctccgttctcgagcttcaaaaggaaaagatattgttcaatatatagagagctct
gatgatgatgaacaaggccgtacagattcttcggattctgacatttatataataagtgat
tgtgaagatgaagtatgtatgcacatgttggatgagcatgagggaaaggatattccagac
ataaatcttgaaccaacttttgagatttctgatgatgatatccaggataatgtgtcaaag
aggaggaaagtggggcctgtgaaaatgaggggaaggcggaggaacaagaacttggatgtg
gtccttgtaagtgttgacagagatagagagtgcaatcagatggatactgtttttgaggat
atagctgatcaatctgagaagaaaagtttgaaaaggaagagtaaagggcataagaggcca
atattagtgtgggaagcattgcaacatgaaattgagagatggattaaggagaatgaagct
aatgatgttgacttgagtaaccagaatgaaattttggcagaaactgttgagccacctgcc
aatttgattataccactgctcaggtaccagaaagagtggttagcttgggcactaaagcaa
gaggagtccaccacaagaggaggcattcttgccgatgaaatggggatgggaaagacagcc
caagcaattgcactagttgtggctaaacaggagatccaaaaggcaatcagtgaacccagt
ttagtagcatctgctcccagttcctccagcacatttccagcagtcaaaggcactcttgta
atatgtccattggtggcagtggttcaatgggtaagtgaaattgaccgtttcaccacaaaa
ggtagcaataaggttcttgtttatcatggatcacacaggggaaggaatattgaccagttt
tccgaatatgattttgttattaccacctattccatagtagaggctgagtaccggagaaat
gtgatgccacctaaacacaaatgccagtggtgtggaaagttactttatgagcacaagatg
tctgttcacctgaagtatttttgtgggcctgatgcaatcaaaacggctaagctgtcaaag
caacagagaaagaagtcaaattcaaaaacaacaacctcgaagcagaacttagagtttgat
gaagatgacgcctttgattcgaatggtgatatgcaaaagcgaggtcgtaagaagggtgca
aagacttcgaatgggatcggggggtcaggaaatgctttcgcttatggtattccagcggat
attggagagtcatcttctacaaagaaatctatcttgcattctgtgaaatgggagcgcatc
attctggatgaggctcattacataaaagatcgacgctctagtactacaagagcggtgttt
gctttacaatctttgtacaaatgggcactcagtggtactccactccagaatcgtgttggt
gaactctactcccttgtacgcttcttggagatagttccttactcttattactactgcaag
gactgtgattgccgatcacttgactacagcacctcaactgattgtccacactgcccccat
aaatctgtcaggcacttttgctggtggaacagacatgttgcttctccaataaaatatgct
ggaaatcttggggaagggagaaaagcaatgctgttgctgaagcataggattttaaaaagc
atagtgttaagacgtactaaaaaaggcagggctgctgatctggcacttccccctaggatt
gttaccctgaggcgggatgaacttgatatcaaagaagaagattattatacatcactatat
aatgaaagtcaggcacaatttaatacatatattgaagcaaatactctgatgaataactat
gcccacatatttgatcttctcacacgcctgcggcaggctgttgatcatccttaccttgtg
gtgtactctagcacagctgctggaagaggtggaagcataaggaatgctcccagtggtgaa
gtatgtggcttatgtcatgagaatgctgaagatgctgtggtgacttcatgcactcatgta
ttttgcaagtcttgtttaattgatttctccgctagcatgggacagatatcatgcccatct
tgtgcaaaactgcttactgtggacttcacaggaaacaaggaaaatgaggatcagatgcct
aaaacaactattaaaggatttaggccatcaagtattcttaatagaatccggctggatgat
ttccagacaagcacaaaaatagatgctttgagggaagaaatcagatttatggttgaaagg
gatgggtctgcaaagggaattgtttttagccaattcacgtcatttttagatctgatacat
tactccctccagaagtctggggttagttgtgttcaattagttggatcaatgtctatggct
gcaagagatgcagctataaaaaaatttactgaagatcctgattgcagaatatttttaatg
agtctcaaagcaggaggtgttgcactcaacctcactgtggcatctcatgtttttttgatg
gatccgtggtggaatcctgcagttgaaaggcaagcccaggatagaattcaccgaatagga
cagtttaaaccaatcagaattgtgaggtttgttatcaaggatacagttgaggagagaatc
ttaaagttgcaagagaagaaggaactggtctttgaagggactgtgggtggctcttcagag
gctttagcaaaactgacggaggcagatctcagattcctgtttcttacttga
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