Coffea arabica (coffee): 113688027
Help
Entry
113688027 CDS
T11342
Name
(RefSeq) nuclear cap-binding protein subunit 1 isoform X1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
carb Coffea arabica (coffee)
Pathway
carb03013
Nucleocytoplasmic transport
carb03015
mRNA surveillance pathway
carb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113688027
09122 Translation
03013 Nucleocytoplasmic transport
113688027
03015 mRNA surveillance pathway
113688027
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113688027
03041 Spliceosome [BR:
carb03041
]
113688027
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
113688027
Spliceosome [BR:
carb03041
]
Common components
Common spliceosomal components
Cap binding complex
113688027
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G_like
MIF4G_like_2
MIF4G
Motif
Other DBs
NCBI-GeneID:
113688027
NCBI-ProteinID:
XP_027061406
UniProt:
A0A6P6S6A0
LinkDB
All DBs
Position
5e
Genome browser
AA seq
862 aa
AA seq
DB search
MSSWKSLLLRIGEKCPEYGGNADFKDHIESCFGIVRRELDPSADDILLFLLECSEQLPHK
IPLYGTLVGLLNLENEEFVKKVLEKIQTNLQDALDSGNCNRIRIFMRFLTVLMCSKVLQP
SSLVIVFETLLSSAALTVDEDKGNPSWQARADFYITCILSCLPWGGAELVEQVPEEIDRV
MVGIESYFSIRRHVSNAGLSVFEDTNENNKLLDEKDFLEDLWVRIQDLSSAGWKLESVPR
PHLCFEPQLVAGKSHDFGPITCPEQPNPSAATFGISCGRQRNVAELKYPQRIQRLNIFSA
SKAEDLRPIDRFVVEEYLLDVLLFLNGCRKECAAYMAGLPVPFRYEYLMAETIFSQLLLL
PEPPFKPMYYTLVIIDLCKALPGAFPAVIAGAVRALFERIADLDMECRTRLILWFSHHLS
NFQFIWPWEEWAHVLDLPKWAPQRVFVQEVLEREIRLSYWEKIKQSIENAPALEELLPPK
GGPNFKYSGEDVSDRTEKALSLELNNLVKGRQTFREIITWVEDSVIPVHGSDFALRVVIQ
TLLDIGSKSFTHLITVLERYGQVIGKICPDQDRQIMLIAEVSSYWKNSSQMTAITIDRMM
GYRLLSNLAIVRWVFSSSNVDQFHISDRPWEILRNAVSKTYNRITDLRKEISSIQRSFLL
AEEAASKARAELETAESNLTLMDGEPVIGENPVRMKRLKSNAERAKDEEISVHDSLDAKE
ALLARAIEENEALFLSLYKSFSNVLAEPLCEAFKDGNVKPADQADEMAIDLESSSAMELD
KENGRPKKSHSNGRRAGNGYNLDEREQWCLSTLGYVKAITRQYASEIWSFIEKLDADVLT
EDVHPLFRRAIYSGLRRPLDEL
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atgagcagctggaagagtttgctactgcgtattggagagaaatgcccagagtatggcgga
aacgcagatttcaaagaccacattgagtcatgttttggcattgttcgtcgagaactagat
ccctctgctgatgatattttgctgtttctacttgaatgttctgaacaattgcctcacaag
attcctctgtatggaacgctggttggcctattgaatttggaaaatgaggaatttgtcaag
aaggtactagaaaaaattcagaccaatttgcaggatgctttggattctgggaattgcaat
aggatccgcatattcatgcgctttttaactgttttgatgtgcagcaaagttcttcaacct
agttctttagttattgtatttgaaaccttgttatcatcagctgcattaaccgttgatgag
gataaaggaaatccatcttggcaagcacgtgctgacttttatatcacgtgcattctatca
tgtcttccatggggaggagctgaacttgttgagcaagtaccggaggagattgatagagtt
atggttggcatagaatcctactttagcattagaagacatgtttcaaatgctggtttgtct
gtttttgaggatactaatgagaacaataagcttcttgatgaaaaggatttcttggaggat
ttatgggttcgcattcaagatttatccagtgctgggtggaaacttgagagtgttcccaga
ccccacctttgttttgaacctcagctggttgctggaaagtctcatgattttggtccaatc
acctgtcctgaacaaccaaatccttctgcagcaaccttcgggatttcctgtggtagacaa
aggaatgtagctgagttgaaataccctcagagaatacaaaggcttaatatattttctgct
agtaaagctgaggatctacgacctatagaccgctttgtggtggaggaatacttgttggat
gtactattgttcttaaatggctgtcgaaaggaatgtgctgcttacatggctgggctccct
gtgccttttcgatatgaatatcttatggcggaaacaatattttctcagcttctgttgttg
cctgagccccctttcaagccgatgtactatacattggttattattgacttgtgtaaggct
cttccaggggcctttcctgcagtaatagccggggcagttcgtgctctttttgagaggata
gctgatttagatatggaatgtagaacgcgtctgattctttggttctcacaccatttatct
aatttccaattcatttggccatgggaagaatgggctcatgtcctggaccttccaaagtgg
gcaccacaaagagtgttcgttcaggaggttctggaaagagaaatccgtttgtcatattgg
gaaaagattaagcagagcattgagaatgcccctgctttggaggagttgcttccaccaaaa
ggtggaccaaattttaaatacagtggagaagatgttagtgatcgaactgaaaaggcactt
tctttggaactaaataacttggtgaaaggtagacaaacattccgtgaaatcatcacttgg
gttgaagatagtgtaattccagttcacggttcagattttgcgctcagagtggttatccaa
accctccttgacataggatccaaaagttttacgcatttgataacagttttggagagatat
ggccaagtcattggaaagatatgtcctgatcaggatagacaaatcatgctgatagctgaa
gtgagttcttattggaagaacagcagccaaatgacagctataaccattgacagaatgatg
ggatatcgccttttatctaatttggctatagtgagatgggttttctcctcatcaaatgtt
gatcagtttcatatctctgatcgtccatgggagattcttagaaatgctgtcagtaagacg
tacaataggattactgatctaaggaaagaaatttcatctatacaaaggagttttttattg
gctgaagaagctgcatctaaagctagagctgagttggagacagctgagtcaaatcttact
cttatggatggtgaaccagtcatcggtgaaaaccctgtgagaatgaagcgattgaaatcg
aatgctgaaagagcaaaagatgaggagataagtgttcatgattctttagatgccaaggag
gctcttcttgcccgtgccattgaggaaaatgaggcattgttcctttcattgtacaagagc
ttttctaatgttctagctgaacccttgtgtgaggcattcaaagatggaaatgtgaagcct
gccgaccaggcagatgaaatggccattgaccttgaaagctcgtctgctatggagttggac
aaagagaatgggagacctaagaaaagtcattcaaatgggagaagggctggtaacggctat
aacctggatgaaagggagcaatggtgcttgtctacactgggttacgtgaaggccatcaca
aggcaatatgcatcagagatatggtctttcattgagaagctagatgctgatgtattgaca
gaagatgtgcatcctctgttccggagagcaatatatagtgggcttcgtcggcctctagat
gagctgtaa
DBGET
integrated database retrieval system
