Coffea arabica (coffee): 113690396
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Entry
113690396 CDS
T11342
Name
(RefSeq) DNA repair protein RAD16
KO
K15083
DNA repair protein RAD16
Organism
carb Coffea arabica (coffee)
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
carb03400
]
113690396
DNA repair and recombination proteins [BR:
carb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NER4 complex
113690396
BRITE hierarchy
SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
zf-RING_UBOX
zf-C3HC4_3
zf-C3HC4
zf-C3HC4_2
zf-RING_5
ResIII
Prok-RING_4
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
113690396
NCBI-ProteinID:
XP_027064079
UniProt:
A0A6P6SE56
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All DBs
Position
5c:complement(38605356..38615107)
Genome browser
AA seq
916 aa
AA seq
DB search
MNLRSRASKGKDIVQYIESSDDDEQGCTDSSDSDIYIISDCEDEVCMHMLDEHEGKDIPD
INLEPTFEISDDDIQDKVSKRRKVGPVKRRGRRRNKNLDVVLVSVDRDRECNQMDTVFED
VADQSEEKSLKRKSKGHKRPILVWEVLQHEIERWIKENEANDVDLSNQNEILAETVEPPA
NLIIPLLRYQKEWLAWALKQEESTTRGGILADEMGMGKTAQAIALVVAKQEIQKAISEPS
LVASAPSSSSTFPAVKGTLVICPLVAVVQWVSEIDRFTTKGSNKVLVYHGSNRGRNIDQF
SEYDFVITTYSIVEAEYRRNVMPPKHKCQWCGKLLYEHKMSVHLKYFCGPDAIKTAKQSK
QQRKKSNSKTTTSKQNLEFDEDDAFDSNGDMQKRGRKKGAKTSNGIGGSGNAFAYGIPAD
IGESSSTKKSILHSVKWERIILDEAHYIKDRRSSTTRAVFGLQSLYKWALSGTPLQNRVG
ELYSLVRFLEIVPYSYYYCKDCDCRSLDYSTSTDCPHCPHKSVRHFCWWNRHVASPIKYA
GNLGEGRKAMLLLKHRILKSIVLRRTKKGRAADLALPPRIVTLRRDELDIKEEDYYTSLY
NESQAQFNTYIEANTLMNNYAHIFDLLTRLRQAVDHPYLVVYSSTAAGRGGSIRNAPSGE
VCGLCHENAEDAVVTSCTHVFCKSCLIDFSASMGQISCPSCAKLLTVDFTGNKENEDQMP
KTTIKGFKPSSIINRIRLDDFQTSTKIDALREEIRFMVERDGSAKGIVFSQFTSFLDLIH
YSLQKSGVSCVQLDGSMSMTARDAAIKRFTEDPDCRIFLMSLKAGGVALNLTVASHVFLM
DPWWNPAVERQAQDRIHRIGQFKPIRIVRFVIKDTVEERILKLQEKKELVFEGTVGGSSE
ALAKLTEADLRFLFLT
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atgaatctccgttctcgagcttcaaaaggaaaagatattgttcaatatatagagagctct
gatgatgatgaacaaggctgtacagattcttcggattctgacatttatataataagtgat
tgtgaagatgaagtatgtatgcacatgttggatgagcatgagggaaaggatattccagac
ataaatcttgaaccaacttttgagatttctgacgatgatatccaggataaggtgtcaaag
aggaggaaagtggggcctgtgaaaaggaggggaaggcggaggaacaaaaacttggatgtg
gtccttgtaagtgttgacagagatagagagtgcaatcagatggatactgtttttgaggat
gtagctgatcaatctgaggagaaaagtttgaaaaggaagagtaaagggcataagaggcca
atattagtgtgggaagtattgcaacatgaaattgagagatggattaaggagaatgaagct
aatgatgttgacttgagtaaccagaatgaaattttggcagaaactgttgagccacctgcc
aatttgattataccactgctcaggtaccagaaggagtggttagcttgggcactaaagcaa
gaggagtccaccacaagaggaggcattcttgccgatgaaatggggatgggaaagacagcc
caagcaattgcactagttgtggctaaacaggagatccaaaaggcaatcagtgaacccagt
ttagtagcatctgctcccagttcctccagcacatttccagcagtcaaaggcactctcgta
atatgtccattggtggcagtggttcaatgggtaagtgaaattgaccgtttcaccacaaaa
ggtagcaataaggttcttgtttatcatggatcaaacaggggaaggaatattgaccagttt
tccgaatatgattttgttattaccacctattccatagtagaggctgagtaccggagaaat
gtgatgccacctaaacataaatgccagtggtgtggaaagttactttatgagcacaagatg
tctgttcacctgaagtatttttgtgggcctgatgcaatcaaaacggctaagcagtcaaag
caacagagaaagaagtcaaattcaaaaacaacaacctcgaagcagaacttagagtttgat
gaagatgatgcctttgattcgaatggtgatatgcaaaagcgaggtcgtaagaagggtgca
aagacttcgaatgggatcggagggtcaggaaatgctttcgcttatggtattccagcggat
attggagagtcatcttctacaaagaaatctatcttgcattctgtgaaatgggagcgcatc
attctggatgaggctcattacataaaagatcgacgctctagtactacaagagcggtgttt
ggtttacaatctttgtacaaatgggcactcagtggtactccactccagaatcgtgttggt
gaactctactcccttgtacgcttcttggagatagttccttactcttattactactgcaag
gactgtgattgccgatcacttgactacagcacctcaactgattgtccacactgcccccat
aaatctgtcaggcacttttgctggtggaacagacatgttgcttctccaataaaatatgct
ggaaatcttggggaagggagaaaagcaatgctgttgctgaagcataggattttaaaaagc
atagtgttaagacgtactaaaaaaggcagggctgctgatctggcacttccccctaggatt
gttaccctgaggcgggatgaacttgatatcaaagaagaagattattatacatcactatat
aatgaaagtcaggcacaatttaatacatatattgaagcaaatactttgatgaataactat
gcccacatatttgatcttctcacacgcctgcggcaggctgttgatcatccttaccttgtg
gtgtactctagcacagctgctggaagaggtggaagcataaggaatgctcccagtggtgaa
gtatgtggcttatgtcatgagaatgctgaagatgctgtggtgacttcatgcactcatgta
ttttgcaagtcttgtttaattgatttctccgctagcatgggacagatatcatgcccatct
tgtgcaaaactgcttactgtggacttcacaggaaacaaggaaaatgaggatcagatgcct
aaaacaactattaaaggatttaagccatcaagtattattaatagaatccggctggatgat
ttccagacaagcacaaaaatagatgctttgagggaagaaatcagatttatggttgaaagg
gatgggtctgcaaagggaattgtttttagccaattcacgtcatttttagatctgatacat
tactccctccagaagtctggggttagttgtgttcaattagatggatcaatgtctatgact
gctagagatgctgctataaaacgatttactgaagatcctgattgcagaatatttttaatg
agtctcaaagcaggaggtgttgcactcaacctcactgtggcatctcatgtttttttgatg
gatccgtggtggaatcctgcagttgaaaggcaagcccaggatagaattcaccgaattgga
cagtttaaaccaatcagaattgtgaggtttgttatcaaggatacagttgaggagagaatc
ttaaagttgcaagagaagaaggaactggtctttgaagggactgtgggtggctcttcagag
gctttagcaaaactgacggaggcagatctcagattcctgtttcttacttga
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