Coffea arabica (coffee): 113692785
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Entry
113692785 CDS
T11342
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
carb Coffea arabica (coffee)
Pathway
carb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
113692785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
carb03400
]
113692785
Enzymes [BR:
carb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
113692785
DNA repair and recombination proteins [BR:
carb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
113692785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
LIG3_BRCT
RTT107_BRCT_5
Motif
Other DBs
NCBI-GeneID:
113692785
NCBI-ProteinID:
XP_027067141
UniProt:
A0A6P6SMP0
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All DBs
Position
6c:complement(55234906..55254606)
Genome browser
AA seq
1175 aa
AA seq
DB search
MEESDIKFNVMVSLFNWMQKSKSSATKRSKFRKFLDAFCREPGDYFSAIRLILPVLDRER
GSYGLKEHALATCLIDALGMSRDSPDAQRLLNWRKGGPKTGSSAGNFSLVASEVLQRRQG
LTSGGLTLKELNEQLDRLSSSENRAEKTAVLSDLIRRTNAQEMKWIIMIILKDLKLGISE
KSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRSQRHKRQDIEVGKPVRPQLALRVSNASAA
WKKLHGKEVVVECKFDGDRIQIHKNNSEIRFFSRSFLDHPEYEHAMSDIIAKNILVDRCI
LDGEMLVWDTSENRFADFGSNQGIAKAAKEGLDSDRQMCYVAFDILYVGDTSVIHQTLAE
RHDLLRKVVKSIKGRLEILVPNGGLNASRSPGEPCWSFVARSLDEVEKFFKDTIENRDEG
IVLKDLASKWEPSDRSGKWLKLKPEYVRAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLAE
RPMPNTHPRRFISFCRVGTGLSDEELDIVVTKLKPYFRKYEYPKKAAPSFYQVTNNSKER
PDVWIESPEKSVIVSITSDIRTIKSEVFAAPYSLRFPRIDRVRFDKPWHECLDVHTFVKL
VHSSNGTTQRGEAYGDSQDHKPKRMKSAKKGEKNLSVVPSHFIQTDVSTVKSETLIFAKM
MFYFANVPSSHSVDLLHKMVVENGGNFSMNLNNSVTHCIAAESRGIKFQAAKLHGDVIHY
SWLLDCCLQKKLLPLQPKYFLYLSERTKRKLEEEIDQFSDSYYVDVDITDLRQLLSNIDR
REHPKRIDYYKKKYCPKEEWARFLGCCFYFYFPAQSIINLEWKVLVELALRRLKVAVSFG
GGRISDDLSHATHVIVLSGPELTVDFNLLFSRLSAEKHLLLSQGLHVVSSQWLEDCIEKD
QKLSEESYSLKPNMQEWILESELNLDKWSSLDKAEEHNTPVSKEYGTTTIRQATTNKPRV
VTLPKKERRTKRGRSSGTNKTRGKTVVNQPRRVRARGGKPAKINEDESDGSGSSANLTFQ
KESVVQTGNSESGGLIGKQSPTKEHLMIEDSELSQKGKTIEQYPEDQSGDGIRVVEDNGM
GSGNRNGTEENEKLEQMVDPVQAMLMHMIPSLGNSKAKSEDRVIRDETLPIESRKTRGTD
PAFADEGSSLDPNPKPEKKRKVSYKDVAGELLKDW
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atggaggaatcggacatcaaattcaacgtgatggtttccttattcaactggatgcagaag
agcaaatcctcggcgacgaagcgttccaagttccgcaaattcctcgatgctttctgccgg
gaaccgggggactatttcagcgccatccgcctcattctgccggtgctcgaccgcgagcgc
ggttcgtatggactcaaggagcacgcgcttgccacctgcctcattgacgccctcggcatg
tcgcgtgactccccggacgcccaacgcctcctcaattggcgcaaaggtggccccaaaaca
ggctccagcgccggcaacttctccctcgtcgcctccgaggtcttacagagaaggcaaggc
ttgacttctggcgggctgactttaaaagaattaaatgaacagcttgatcgcttgtcttca
agtgaaaatagagcagagaaaaccgcagttctttctgatttgatcaggagaacaaacgct
caagaaatgaagtggatcattatgataattctcaaagatctgaagttgggaattagtgaa
aaaagcatttttcatgaattccatccggatgcggaggacttgttcaatgtcacatgtgat
ttgaaactagtttgtgaaaaactgagggaccgaagtcaacgacacaagcgtcaggacata
gaagttggaaaacctgtgcgccctcagctagcactaagggttagcaatgctagtgctgca
tggaaaaagcttcatgggaaggaagttgttgtcgaatgcaaatttgatggtgatcgcatc
caaattcataaaaataactcggaaatacgtttcttttctagaagttttcttgatcatcca
gagtatgaacatgcaatgtcagacatcattgcaaagaacattctggttgacaggtgtatt
cttgatggtgaaatgttggtctgggatacatctgaaaaccgttttgcagattttggttcc
aatcagggaatagcaaaggcagcaaaggagggacttgatagtgatcggcagatgtgctat
gttgcttttgacattctatacgtgggagataccagtgttatacaccaaactttagcagaa
cgccatgatcttctgcgcaaggttgtcaagtccataaaaggtcgattggaaattttggtt
cctaatggtggtcttaacgcaagtcgctctcctggtgagccatgttggtcctttgtagct
cgtagccttgacgaagtcgagaagttttttaaagacaccatcgagaatagggatgaagga
atcgtcctaaaagatcttgcttccaaatgggagccaagtgatcggagtggaaagtggctt
aagttgaagcccgagtatgttagagctggttctgacttagatgtcctcattataggaggc
tactatggttctggacgtcgtggaggggaagtagcgcagtttttggtaggacttgcagag
cgtccaatgccaaatacccatcctaggcgattcatttcgttttgtcgtgttggtacggga
ctttctgatgaggagcttgatatagttgttacaaaattaaaaccttatttcaggaaatat
gaatacccaaagaaggcggcaccaagcttttatcaagttactaataattcgaaagagagg
ccagatgtttggattgaaagtccagagaaatcagttattgtttcgattactagtgatatt
cggaccataaaatctgaggtatttgctgcaccatacagcctgagatttccacggattgat
cgagtaagatttgacaagccttggcatgaatgccttgatgtgcatacttttgtgaagtta
gttcattccagcaacggtaccacacaaagaggggaagcttatggagattcacaggatcat
aaacccaagcgcatgaagtcagccaaaaaaggggagaagaatctttcagttgttccttct
catttcatccagactgatgtttccactgtaaagagtgaaacgcttatatttgcaaaaatg
atgttctactttgctaatgttccttcatctcattccgtggatctgttgcacaaaatggtg
gtggagaatgggggcaatttctcaatgaatttgaataactcagtcacacactgtattgca
gctgaaagtagaggaatcaagtttcaggcagcaaagcttcatggtgatgttattcattat
tcttggcttctcgattgctgtttgcagaagaagctccttcccttacagccaaagtacttt
ctttatctttctgaacgcacgaagagaaagttagaggaagaaattgaccaattctctgac
tcttactatgtggatgttgatattacagatctcagacagcttttgagcaacattgatcga
agagagcatccgaagaggattgactattacaaaaagaaatattgtccaaaggaggaatgg
gctcgttttcttggttgctgcttttacttttactttccagcgcagtctataattaacttg
gagtggaaagtcctagtggaacttgcattgaggagattgaaggttgcagtttcttttggt
ggtggcagaattagtgatgatctttctcatgctacccatgtaatcgtcttgtctgggcca
gaattaactgtggacttcaatttgctatttagtagattatcagctgagaagcatcttcta
cttagtcaagggttgcatgttgtttcttctcagtggttggaggactgcattgagaaggac
cagaaattgtcagaggagagttacagtctgaagcccaacatgcaagaatggatattggag
agtgagctgaatctggacaagtggtctagtttggataaggcagaagagcataatacacca
gtatctaaagaatatggaactacgacaattcgtcaagctacaaccaacaaacctagagtt
gttaccttgcctaagaaagaaagaaggacaaaaagaggaagatccagtggaaccaataaa
actagagggaaaactgtggtcaaccagccacgaagggtaagagcacgtggaggaaagcct
gcaaaaataaatgaagatgaatcagatggaagtggctcttcagctaatttgacctttcag
aaagaatctgttgtccaaacaggaaatagtgaaagcggtgggttgattggcaagcagagt
ccaacaaaagagcatctgatgatagaagatagcgaattatcacaaaaagggaaaacaatt
gaacaatatcctgaagatcaaagcggagatgggataagagttgttgaagataatggaatg
ggatcaggcaacagaaatggtactgaagagaatgagaagctagagcagatggttgatcct
gttcaagccatgttaatgcacatgattccaagccttggaaatagtaaggctaaaagtgag
gatcgggtcattcgagatgaaacgttaccaatagaaagccgaaagaccaggggcacagat
cctgcttttgcagatgaaggatcctccctggatcctaacccaaagccagaaaagaaaagg
aaggttagctataaggatgtggctggggagctgctcaaggactggtaa
DBGET
integrated database retrieval system
