KEGG   Coffea arabica (coffee): 113702652
Entry
113702652         CDS       T11342                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1-like
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
carb  Coffea arabica (coffee)
Pathway
carb03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:carb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    113702652
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:carb03021]
    113702652
Enzymes [BR:carb01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     113702652
Transcription machinery [BR:carb03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     113702652
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5 RNA_pol_Rpb1_1 RNA_pol_Rpb1_4 Zn_ribbon_PaaD
Other DBs
NCBI-GeneID: 113702652
NCBI-ProteinID: XP_027079557
UniProt: A0A6P6TNF0
LinkDB
Position
8e:complement(50261606..50278801)
AA seq 1476 aa
MDRATIDIEHSEKLEQKGRLMSISFNILSEADAVRKSVKLIGAASEVTDPALGFPNLINH
CNTCGAKDRRECEGHFGLINFPFTILNPYFLPEVAQILNKICPACKSVHVNKVKSSGSTS
VRDHSDTCKYCDGRSRDSYPPMKFKVTSKDVFAKTAISAEVSERSSSNRSSKGSMASDYW
DIIPSDAQQDLSNLGSNKRLLSHAQVYNILKDVDPRFLESFLKRKSSVFLNCFLLTPNCH
RVTELGQHITFDTKTKLYKKLIDFRGTANELSARVLDLIKVSKVRSQKSSAINSAFSVLG
FKDSAVATSGLKYIKELLLGKRTDHAFRMVVVGDPNINLGEIGMPRHIAEKLLVSEHVNR
WNFGKLKDYVALILVGGGEICVRRGGRLEKLSIIDKLCCGDVLYRPMLDGDIVLINRPPS
IHQHSMLSLSVRILPINSVLSINPLICSPLRGDFDGDCLHGYVSQSVDSRVELNELVALN
KQLLNGQSGRNLLSLSHDSLTAAHLILEDGVTLDKFQMQQLQMFCSCPMPIPAITKAPGN
KCFWTGKQLFSLLIPPCFDYVSQSNGVQISKGEIVTSSSGSSWLRDNDGNLFHSLVRCCK
NEVLGFLCAAQEVLCEWLAMRGLSVSLSDLYLTSDAYSRQNMIEEVSCGLQEAELLSSIR
LLMMGSNQDFLVESTEANKRSVDFGEQHLSSIQQQNSSVLSEASVSAFKQVFLDVQHLVY
HYVSKDNSFLSMLMAGSKGNLLKLVQHSMCLGLQHSVVPLSFSIPHQLSCATWNYHKISV
HESHGTLDHSGSYIPFAVIENSFLTGLNPMECFVHSLTTRDSSFSGHADVSGTLTRKLMF
FMRDLSIGYDGTVRNSYGNQLIQFSYNSRDTLTPCNCNDESPSETIPAYDVVGGHPVGAL
AACAISEAAYSALDLPISALESSPLLNLKKILDCGVKKSSGDKTASIFLCKKLGRQTYGL
EYGALEVKDHLERLMLRDVVSSSMISYSKEKCSRTQISPWICHLHISKEIIKRKRLRVQS
IIDALNMAWRSAKVKLKINLPDLQITGKACSLALKQNEKDTKICLTVSILEKSKKSSLRL
DILRNMVMPFLLGTVIKGFPEFKKVDIMWKDCRNSSKSSKGSLGGVYLRVFMSEKCDRTK
FWSILVDNCLRIRDLIDWERSHPDDIHDMAPAYGIDAAVNHFLSSLNSAISDTGKTILPE
HLVLTADCLSATGEFVALNAKGLAQQRKETAVSSPFLQACFSSPGDCFVRAAKTGIVDNL
QGTVDALSWGMVPSIGTGARFDIIYSGKGHEPAKSIDVYDLLGSIVNLNQQVKFPNKDYE
MSGKSMVQHLFAYDDLATKGCILPRTLLRNFFSLKDIQKLSHSLKHMLNKYDVDCQLSEI
DKTIVMAALSFHPRSSEKIGIGAHEIKVGYHSEYDNSRCFVLVRKDGTVADFSYHKCVHN
ALRLIAPDWAKKYESKWLNGPKANSRVWPMGHRCRK
NT seq 4431 nt   +upstreamnt  +downstreamnt
atggatcgggcgacaattgatattgagcattcagagaagctagagcagaaaggtcgccta
atgagcatttctttcaacattttatctgaggctgatgcagtaaggaaatcagtgaagcta
attggagctgccagtgaagtgacagatcctgctttgggttttcctaatctaattaaccat
tgcaatacttgtggtgccaaagacagaagagaatgtgaaggtcattttggtttaatcaac
ttcccttttacaattctcaacccatatttcttaccagaggttgcacagattttaaataag
atctgtccggcatgcaaatctgttcatgttaataaggttaagagctctggatcaacatct
gtgcgtgaccactctgatacttgtaaatattgtgatggaaggtcaagagattcttatcca
ccaatgaaattcaaagtgacttcaaaagatgtcttcgccaaaactgcaataagtgcagaa
gtgagcgaaaggtcatcaagcaataggagttcaaaagggtcaatggcttctgattattgg
gatattattccttctgatgctcagcaagatctaagtaatttgggatcaaataaacgcctt
ctgtcacatgcccaggtttataacatcttaaaagatgttgacccgaggttccttgaatca
tttctgaaaaggaaaagctctgtcttccttaactgttttcttttgactcccaactgtcat
cgtgtgacagaattgggacaacatataacttttgacacaaaaacaaagttgtacaaaaaa
ctgattgattttagaggaactgccaacgaactgagtgctcgtgttctggacctcattaaa
gtttcaaaggttcgatctcaaaagtcatcagctataaattctgctttcagtgtgcttggt
tttaaagattctgctgttgctacatctggtttaaagtatatcaaagaactacttttggga
aagcgaactgatcatgcttttcgcatggttgtagttggcgatccgaatataaatcttggt
gaaattggcatgcctcgtcatattgcagaaaagctgcttgtctctgagcatgtgaacagg
tggaactttgggaagctaaaggattatgttgccctaatacttgttggtggtggagagatt
tgtgttcgtagaggaggtagacttgagaaacttagtatcattgacaagctgtgttgtgga
gatgttttgtataggcctatgcttgatggagatattgttttgataaacaggcctccgtct
atccatcagcactccatgctttccctatctgtcagaattcttccaataaattcagttctc
tctatcaatcctcttatttgttctcctctccgtggagattttgatggtgactgccttcat
ggttatgtatctcaatcagttgattctagagttgaactcaatgaacttgttgctctaaac
aaacagctacttaatgggcagagtggtcgaaaccttttgtcactaagtcatgatagttta
actgcagctcatttaattttggaggatggggtgactttggacaagtttcaaatgcagcaa
ttgcagatgttttgctcttgcccaatgccaattcctgctatcaccaaagcccctggaaac
aagtgcttttggacagggaaacaattattttccctacttattcctccatgttttgattat
gtttcacagtcaaatggtgtgcagataagcaaaggggaaattgttacttcttctagtggg
tcttcttggctgcgggataacgatgggaacctcttccatagtcttgttagatgctgtaaa
aatgaagttcttggctttctgtgtgctgcacaggaagttctttgtgagtggttggcaatg
agagggctaagtgtatcactttctgatctttaccttacttctgatgcatattccagacaa
aatatgattgaagaagtctcttgtgggctgcaagaagcagagctgctatcttcaatcaga
cttctgatgatgggttccaatcaagatttccttgttgaaagcactgaagcaaacaaacgt
agtgtagattttggagaacagcatttgtcttctattcagcagcagaactcctcagtactc
agtgaagcttctgtttctgcttttaagcaagtgtttttggatgttcagcatttggtgtac
cactatgtgagcaaggataactcatttttgtctatgttaatggctggaagcaagggcaac
ttgctaaaattagttcagcacagtatgtgtcttggtttgcagcattcagtggttccatta
tcctttagtattccccatcagctttcttgtgctacctggaattatcataagatctctgtt
catgaatctcatggtaccttagatcattccggttcttacatcccgtttgctgtcattgaa
aattcatttctaacaggcttaaatcctatggaatgttttgtgcattcattgacaactcga
gatagttctttcagtggtcatgcagatgtgtctgggactttgacccggaaacttatgttt
ttcatgcgtgatctaagcattggatatgatggaacagtaagaaattcttatggaaatcaa
cttattcagttttcatacaatagcagagatactctgactccctgtaactgcaatgatgag
tctcccagtgagacaattcctgcttatgatgttgtgggtggtcatcctgttggtgcactg
gctgcttgtgcgatttctgaagccgcatacagtgcattagacttgcctattagtgcactt
gaatcatcaccactcctgaacctgaagaaaattctagattgtggagtaaaaaagagcagt
ggtgataagactgcatcaatctttttgtgtaagaaacttggaaggcagacctatggtctt
gaatatggagcattagaagtgaaggatcatttggagaggctaatgctcagagatgtagtt
tcttcttcaatgatcagctactccaaggagaaatgtagtcgcactcaaataagtccttgg
atttgtcatttgcatatatccaaggaaattatcaagaggaaaaggctcagggtgcagtca
ataattgatgctcttaacatggcatggagatctgctaaagtaaaattgaaaataaatctt
ccagacctgcagataacgggaaaggcgtgttctctagctttaaagcaaaatgaaaaggat
accaagatatgcctcacagtttcaattcttgagaagtccaagaaatcatctttacgtctg
gatatccttcgaaatatggtaatgccgttcctccttggaactgttataaaagggttccca
gaatttaagaaagttgatatcatgtggaaagattgtcggaattcatcaaaatcttctaaa
ggctctttgggtggagtttatttgcgggttttcatgtcagagaagtgtgacagaacgaaa
ttctggagtatccttgtggacaattgcctccgcataagagatctcattgattgggaacgc
agtcatccagatgatattcatgatatggctccagcttatggcattgatgctgcagtaaac
cattttctaagtagtctcaattctgcaatcagtgatactgggaaaacaattctcccagaa
catttagttcttactgcagattgcctttctgctactggagaatttgttgctttaaatgcc
aaagggctggcacagcaaagaaaggagactgctgtttcttcaccctttctgcaagcatgc
ttttctagcccaggtgattgctttgttagagctgccaagacgggaattgtggataatctt
caaggaactgtagatgccttgtcatggggaatggttccttcaatagggactggtgctcga
tttgatatcatatattctgggaagggtcatgaacctgctaagtccatagatgtctacgat
ctgctgggtagcattgtcaacttgaatcaacaagtgaagtttccgaacaaagactatgaa
atgtctggaaaatctatggtgcaacatttatttgcatatgatgatttagcgacaaaggga
tgcattctccctcggacactcttgcggaatttcttctcattgaaagatatccaaaagctc
tctcacagcttgaaacatatgttaaataagtatgatgttgattgccagctcagtgaaata
gataagactattgtaatggctgctttaagttttcatcctcgaagcagtgagaagattgga
ataggggctcatgaaattaaggtgggatatcactcagaatatgataattctcgctgcttt
gtgttggtaaggaaagatgggactgttgcagacttttcttatcacaagtgtgtacataat
gctctgcggttaattgctcctgattgggcaaaaaaatacgagtcaaaatggttgaacggc
cccaaggcaaatagtcgagtgtggccaatgggccatcgttgccgaaaataa

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