Coffea arabica (coffee): 113711712
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Entry
113711712 CDS
T11342
Name
(RefSeq) protein ALTERED SEED GERMINATION 2 isoform X2
KO
K11807
WD and tetratricopeptide repeats protein 1
Organism
carb
Coffea arabica (coffee)
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
carb04121
]
113711712
Ubiquitin system [BR:
carb04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
113711712
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_THOC3
WD40
Beta-prop_IFT122_1st
Beta-prop_WDR3_1st
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_2nd
WDR55
WD40_Gbeta
Beta-prop_WDR3_2nd
Beta-prop_WDR75_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR36-Utp21_2nd
NBCH_WD40
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_TEP1_C
Beta-prop_WDR35_TULP_N
TRM82_WD
Beta-prop_VPS8
Beta-prop_Aladin
ASA1
Beta-prop_RIG_2nd
Beta-prop_HPS5
WD40_MABP1-WDR62_2nd
Beta-prop_WDR41
ANAPC3
Beta-prop_WDR90_POC16_2nd
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
TPR_14
Motif
Other DBs
NCBI-GeneID:
113711712
NCBI-ProteinID:
XP_027090680
UniProt:
A0A6P6UJH0
LinkDB
All DBs
Position
10e:47952603..47964925
Genome browser
AA seq
761 aa
AA seq
DB search
MESLRFHDGNITDLIDFRILGLRSDITHSLQVHSSMVRRLFLERELEGHRGCVNAVAWNS
EGSLLISGSDDTQINIWSYSSRKLLHSIETGHSTNIFCTKFVPETSDELVVSGAGDAEVR
LFNLSRLSGRGLDENMITPSAIFQCHTRRVKKLAVEVGNPNVVWSASEDGTLRQHDFREG
ASCPPAGSSHQECRNILLDLRWGAKKSLADPPKQSLALKSCDLSFTRPHLLLVGGSDAFA
RLYDRRMLPPLSSSEKKLPPPPCVSYFCPMHLSDRGRSSIHLTHVAFSPNSEEVLLSYSG
EHVYLMDVNPATGSSMRYTVGDITKLTSFTPILNGVELQQSFPRVCSNGSSKGHVAARLD
KCRKLIQFAGKSLKGETSSYDGIEACNEVLDGHGHEIGPSLMLECLCIRAALLLKRKWKN
DVHMAIRDCYRARKINSSSLKALLCMSEALFQLGKHKEALDFAFAAQTLAPSDSEVLEKV
ENIKNLIAAAEAEKNKTTNGGSNSEPRSARLLSLSDILYRSEANSDASQDGPRSEREDSD
YDEELELDFETALPEEEGRDIESNVLHGSLNLRIHRRDDANMETGRANGSCESPASSCQN
DKAPYEPEAVTDMKQRYVGHCNVGTDIKQASFLGQRGEYIASGSDDGRWFIWEKRTGRLV
KILHGDDAVVNCIQCHPFDCVVATSGIDNTIKIWTPSASVPSSVAGGAAGPETSDVLDAM
ENNQRRLSQSREAILPFEILERFRMHEFAEGSLHPFECTQS
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atggagtcgctgcgttttcacgacggtaacatcaccgacttgatcgattttcgtattctc
ggccttcgttccgacattactcacagtttgcaagtgcactcctcaatggtgcgaaggttg
ttcttggagagagaattggaggggcataggggttgtgtgaatgctgtggcttggaattca
gaaggctcacttttaatatctggatctgatgatacacagattaacatttggagttattca
agccggaagcttttgcactctattgagactgggcattctactaatatattctgtacaaaa
tttgttcctgagacttcagatgagcttgtggtttctggggccggagatgctgaagttcgg
ctctttaatttgtctcgattgagtggtagaggacttgatgaaaacatgattactccttcg
gcaatttttcaatgtcacaccaggagggttaaaaaattagctgtagaagttggaaaccca
aatgttgtgtggagtgctagtgaagatgggactttgaggcagcacgattttcgggaaggt
gcttcatgccccccagcaggatcttctcaccaagaatgtcgcaatattctacttgacttg
cgttggggagccaagaagtcattagctgatcctcccaagcaatctcttgcactgaagtct
tgtgatctcagttttacgaggccgcatttgctccttgttggtgggagcgatgcatttgcc
cgtttgtatgatagaagaatgctgccaccattatcatccagtgaaaagaagttgccgcca
cctccttgtgtcagctacttttgtccaatgcatctttctgatcgtgggcgttctagcata
catctaacccacgttgcctttagccccaattctgaggaggttcttctcagttatagtggg
gagcatgtatacctgatggatgtaaatcccgcaactggaagtagtatgcggtacacggta
ggagatatcacaaaactgacaagctttactcccatactcaatggagtggaattgcaacag
tcatttcctcgtgtctgctctaatggatctagtaaaggccatgttgctgctaggcttgac
aagtgcagaaaactgatccagtttgctggaaaatcactgaagggtgaaacaagctcttat
gatggaattgaggcttgtaatgaagttttggatggccacggtcatgagattggaccttca
ttaatgctcgagtgtttgtgtatacgtgcagctttgttgcttaagcggaaatggaaaaat
gatgttcatatggcaataagagattgctatagagctaggaaaatcaattcttcttctttg
aaggcactgctttgtatgtctgaagctttatttcagttggggaagcataaagaagcgctt
gactttgcttttgctgcccaaacattggctccatctgattctgaagttctagaaaaggtt
gagaatataaagaatctcatagctgcagctgaagctgagaaaaacaagactaccaatgga
ggatctaattctgaacctcgatctgcaaggttactgtcgttgagtgacatactttatcgt
tctgaggctaatagtgatgcttcacaagatggtccaaggtctgaaagagaagattcagat
tatgatgaggaattagagctggattttgagacagcattaccagaagaagaaggacgggat
attgagtccaatgttcttcatgggagtttaaatttaaggatccataggagagatgatgca
aatatggagacaggacgtgcaaatggttcttgtgaatcacctgcatcatcgtgtcaaaat
gataaagcaccttatgagcctgaggcagtcacagacatgaagcaaagatatgttggccac
tgtaatgttggcactgatataaaacaagccagttttcttgggcaaagaggtgaatatatt
gctagtggaagtgacgatggcagatggttcatatgggagaagagaactggtagattagta
aaaatactgcatggagatgatgcggttgtgaattgcatccagtgtcatccatttgattgt
gttgtggctactagtggaattgacaatacaataaagatttggacacctagtgcttcagtt
ccttccagtgtagctggtggagcggctggaccagagacttcagacgttctagatgcaatg
gaaaacaatcagcgaaggttaagtcagagtcgggaagcaatcttgccctttgaaatcttg
gaaagatttcggatgcatgaatttgcagaaggcagcttgcatccattcgagtgcacacag
agctag
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