Coffea arabica (coffee): 113714798
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Entry
113714798 CDS
T11342
Name
(RefSeq) protein ALTERED SEED GERMINATION 2-like isoform X1
KO
K11807
WD and tetratricopeptide repeats protein 1
Organism
carb
Coffea arabica (coffee)
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
carb04121
]
113714798
Ubiquitin system [BR:
carb04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
113714798
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_THOC3
WD40
Beta-prop_IFT122_1st
Beta-prop_WDR3_1st
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_2nd
WDR55
WD40_Gbeta
Beta-prop_WDR75_1st
Beta-prop_WDR3_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
NBCH_WD40
ANAPC4_WD40
Beta-prop_WDR36-Utp21_2nd
Beta-prop_SCAP
Beta-prop_TEP1_C
Beta-prop_WDR35_TULP_N
Beta-prop_VPS8
TRM82_WD
Beta-prop_Aladin
Beta-prop_HPS5
Beta-prop_RIG_2nd
ASA1
WD40_MABP1-WDR62_2nd
Beta-prop_WDR41
Beta-prop_WDR90_POC16_2nd
WDR90_beta-prop_4th
PH_DAAF9
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
113714798
NCBI-ProteinID:
XP_071925171
UniProt:
A0ABM4W054
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All DBs
Position
10c:complement(53395605..53408235)
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AA seq
823 aa
AA seq
DB search
MDGKNHEDDVVKAKTSSLSVYCYANPGQACPAQPSPTDSLHFFTSVTQLFKSILIISVPE
MESLRFHDGNITDLIDSRILGLRSDITHSLQVHSSMVRRLFLERELEGHRGCVNAVAWNS
EGSLLISGSDDTQINIWSYSSRKLLHSIETGHSTNIFCTKFVPETSDELVVSGAGDAEVR
LFNLSRLSGRGLDENMITPSAIFQCHTRRVKKLAVEVGNPNVVWSASEDGTLRQHDFREG
ASCPPAGSSHQECRNILLDLRWGAKKSLADPPKQSLALKSCDLSFTRPHLLLVGGSDAFA
RLYDRRMLPPLSSSEKKLPPPPCVSYFCPMHLSDRGRSSIHLTHVAFSPNSEEVLLSYSG
EHVYLMDVNPATGSSMRYTVGDITKLTSFAPILNGVELQQSFPRVCSNGSSKGHVAARLD
KCRKLIQFAGKSLKGETSSYDGIEACNEVLDGHGHEIGPSLMLECLCIRAALLLKRKWKN
DVHMAIRDCYRARKINSSSLKALLCMSEALFQQLGKHKEALDFAFAAQTLAPSDSEVLEK
VENIKNLIAAAEAEKNKTTNGGSNSEPRSARLLSLSDILYRSEANSDASQDGPRSEREDS
DYDEELELDFETALPEDEGRDIESNVLHGSLNLRIHRRDDANMETGRANGSCESPASSCQ
NDKAPYEPEAVTDMKQRYVGHCNVGTDIKQASFLGQRGEYIASGSDDGRWFIWEKRTGRL
VKILHGDDAVVNCIQCHPFDCVVATSGIDNTIKIWTPSASVPSSVAGGAAGPETSDVLDA
MENNQRRLSQSREAIFRPFEILERFRMHEFAEGSLHPFECTQS
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atggacgggaaaaaccacgaagatgacgttgttaaagcaaagacgtcgtcactctcagtg
tattgctacgccaacccaggccaggcctgcccagcccagcccagtccaaccgactcactg
catttttttacttccgtcacccagctcttcaagtctattttgatcatcagtgttccggaa
atggagtcgctgcgttttcacgacggtaacatcaccgacttgatcgattctcgtattctc
ggccttcgttccgacattactcacagtttgcaagtgcactcctcaatggtgcgaaggttg
ttcttggagagagaattggaggggcataggggttgtgtgaatgctgtggcttggaattca
gaaggctcacttttaatatctggatctgatgatacacagattaacatttggagttattca
agccggaagcttttgcactctattgagactgggcattctactaatatattctgtacaaaa
tttgttcctgagacttcagatgagcttgtggtttctggggccggagatgctgaagttcgg
ctctttaatttgtctcgattgagtggtagaggacttgatgaaaacatgattactccttcg
gcaatttttcaatgtcacaccaggagggttaaaaaattagctgtagaagttggaaaccca
aatgttgtgtggagtgctagtgaagatgggactttgaggcagcacgattttcgggaaggt
gcttcatgccccccagcaggatcttctcaccaagaatgtcgcaatattctacttgacttg
cgttggggagccaagaagtcattagctgatcctcccaagcaatctcttgcactgaagtct
tgtgatctcagttttacgaggccgcatttgctccttgttggtgggagcgatgcatttgcc
cgtttgtatgatagaagaatgctgccaccattatcatccagtgaaaagaagttgccgcca
cctccttgtgtcagctacttttgtccaatgcatctttctgatcgtgggcgttctagcata
catctaacccacgtcgcctttagccccaattctgaggaggttcttctcagttatagtggg
gagcatgtatacctgatggatgtaaatcccgcaactggaagtagtatgcggtacacggta
ggagatatcacaaaactgacaagctttgctcccatactcaatggagtggaattgcaacag
tcatttcctcgtgtctgctctaatggatctagtaaaggccatgttgctgctaggcttgac
aagtgcagaaaactgatccagtttgctggaaaatcactgaagggtgaaacaagctcttat
gatggaattgaggcttgtaatgaagttttggatggccatggtcatgagattggaccttca
ttaatgctcgagtgtttgtgtatacgtgcagctttgttgcttaagcggaaatggaaaaat
gatgttcatatggcaataagagattgctatagagctaggaaaatcaattcttcttctttg
aaggcactgctttgtatgtctgaagctttatttcagcagttggggaagcataaagaagcg
cttgactttgcttttgctgcccaaacattggctccatctgattctgaagttctagaaaag
gttgagaatataaagaatctcatagctgcagctgaagctgagaaaaacaagactaccaat
ggaggatctaattctgaacctcgatctgcaaggttactgtcattgagtgacatactttat
cgttctgaggctaatagtgatgcttcacaagatggtccaaggtctgaaagagaagattca
gattatgatgaggaattagagctggattttgagacagcattaccagaagatgaaggacgg
gatattgagtccaatgttcttcacgggagtttaaatttaaggatccataggagagatgat
gcaaatatggagactggacgtgcaaatggttcttgtgaatcacctgcatcatcgtgtcaa
aatgataaagcaccttatgagcctgaggcagtcacagacatgaagcaaagatatgttggc
cactgtaatgttggcactgatataaaacaagccagttttcttgggcaaagaggtgaatat
attgctagtggaagtgatgatggcagatggttcatatgggagaagagaactggtagatta
gtaaaaatactacatggagatgatgcggttgtgaattgcatccagtgtcatccatttgat
tgtgttgtggctactagtggaattgacaatacaataaagatttggacacctagtgcttca
gttccttccagtgtagctggtggagcggctggaccagagacttcagatgttctagatgca
atggaaaacaatcagcgaaggttaagtcagagtcgggaagcaatcttcaggccctttgaa
atcttggaaagatttcggatgcatgaatttgcagaaggcagcttgcatccattcgagtgc
acacagagctag
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