Coffea arabica (coffee): 113714917
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Entry
113714917 CDS
T11342
Name
(RefSeq) ABC transporter I family member 19-like
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
carb Coffea arabica (coffee)
Pathway
carb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113714917
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113714917
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
113714917
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
AAA_15
nSTAND3
ORC-CDC6-like
AAA
SMC_N
NACHT
AAA_23
AAA_28
Zeta_toxin
AAA_18
AAA_24
AAA_30
SRP54
AAA_5
PduV-EutP
AAA_22
AAA_25
AAA_7
AAA_33
nSTAND_NTPase5
Arf
ATP-synt_ab
Motif
Other DBs
NCBI-GeneID:
113714917
NCBI-ProteinID:
XP_027094864
UniProt:
A0A6P6UVT2
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Position
1c:complement(58051985..58055394)
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AA seq
286 aa
AA seq
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MEESSCSIQVNGMQFAYEIQTPLFFDFTINISPGSRCLLVGSNGSGKTTLLKILAGKHMV
GGRDVVRVLNLSAFHDTNLVCGGDLAYLGDSWSKNVGSAGEIPLQGDFSAEHMIFGVEGV
DPVRREKLIELLDIDLHWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEVTVDLDVVARMD
LLDFFREECEQRGATIVYATHIFDGLETWATDIVYIQEGILKRHEKLSNLSELKASPNLL
SVVESWLRSETKVEKKKHITAQSPVRKSSPFDASPFRSSRHMAYYR
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atggaggaatccagctgtagcattcaagtgaatggcatgcaatttgcatatgagattcaa
acccctctctttttcgattttaccatcaacatatctcctggatctcgttgtctccttgtc
ggatccaatggctctgggaagacgaccctactgaagatactggctggaaaacatatggtt
gggggaagggatgtggtgcgggtgctgaatttatcagcttttcacgataccaatcttgtt
tgcggcggcgacttggcctatctgggagattcctggagtaaaaatgttggttctgctgga
gaaattccacttcagggagacttctcagcagagcatatgatatttggagtggaaggggta
gaccctgttaggcgagagaagttgatcgaactactagatattgatctgcattggaggatg
cataaggtttctgatggtcaacggcgtcgggtccaaatctgcatgggtctccttcaccct
ttcaaggttcttttactggatgaggttactgttgacctggatgttgttgcaaggatggac
ttgctagatttttttagggaagaatgcgagcagagaggagcaacaattgtttatgcaacg
cacatatttgatggattggagacatgggcaacagatattgtatacattcaagaaggtatt
ttgaagaggcatgagaagttatctaacctttcagaactaaaggcttccccaaatttactg
tcagttgtggagtcttggcttcgatctgaaaccaaggttgagaagaaaaaacacattact
gctcaaagtccagtccggaagtcctcgccatttgatgcttctccttttagatcgtccaga
cacatggcatactataggtga
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