Coffea arabica (coffee): 113742529
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Entry
113742529 CDS
T11342
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 13-like isoform X1
KO
K15164
mediator of RNA polymerase II transcription subunit 13
Organism
carb
Coffea arabica (coffee)
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
carb03021
]
113742529
Transcription machinery [BR:
carb03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
CDK-module
113742529
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MID_MedPIWI
Med13_N
Med13_C
DUF4780
Motif
Other DBs
NCBI-GeneID:
113742529
NCBI-ProteinID:
XP_071909149
UniProt:
A0ABM4UPE3
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Position
1c:complement(429519..449960)
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AA seq
1948 aa
AA seq
DB search
MWTNVFKIGGLHQISWFQFLPNEFDPSSLSDKSVKVDARDAATSVVLSSHLQLQKEGFLS
TWTNSFVGPWDPSQGLHNPDEKIKLWLFLPGNHSSVVEKAQPTVSKLRVLASGLWVAPGD
SEEVAAALSQALRNCVERALKGFSFMRFGDVFSRYHPSSQSEELYRKGQPVVEFIFAATE
EAIFVHAVISAKHIRALSSGDIEMTLKHSTDHFSNRLPVVISPHGMLGRLTGCCPSDLVK
QVYFSSVKLKASNEVVGLPYHALHGSGCHLRGQNCYAEITLGGPIGGNDKILAQNSGLHK
NLSRHNLTESMPETKVNQKGPLEPSRVFIYPAEAVLVPVMQTSLARSCLKRFWLQNWIGP
SLFASSFFMHSSDCKADSKDGSRLESNSLRSQHGYHSSSSSNNSSISSISSSSSDSDYRT
SGAGDLEADADSLTCRQSGLSSIDQSHDILKLGSKRVHSGMSESFNQAGAVINPSTSDYG
SIEVNNSAIIGGSNHPVGWGWDDDDRGMGMDIQALLSEFGDFGDLFEDDVLPFGEPPGTA
ESQAVVISAQDCGDFGSSPSTSMMDVSDQMLLPVGFPSFESFHSPPAPVAMDDSLTQNQD
LTKTVSVPGKVNCPPASTSGEFDHVVKAEALMTFAPEYGAVETPSVEVTSSIFRSPYLPK
SRKTETENSCSNKYVYSATPPSPCVDDSDEKSGITVNMKICSGRQDKIAVPQSKKYYTHI
DGGIHKSNGMSSTCDDGTAAHEPVTMSSSLGLNSLNAVKSVSSKGSDGSLRVESFVPSLK
PMLATELECLMCQAFMCRIRHTLLSSRCHLPVGLNRLSAVNILNQPHVDSSILSDNLSSK
SEVKKKETIPVRIAGDMDAVLLDGNLSAPVGVWRPVTKGAKSTTHPMELCPSIPQNSFVE
ENLLSYGLRQPLQELLDGLALLVQQATSFVDVALDSDCGDGVHGWLALQEQLRRGFSCGP
SMVHAGCGGVLSSCHSVDIAGVELVDPLSVDVQPSFTISLLQSDIKAALKTAFGTLDGPL
FVSDWCKGRSLSCEAGSMCDEFYAESTASASECQDSSNGARAEEASDRKSLQEACLSESE
QQAGSKLRPTLAVVPFPAILVGYQDDWLKTSASSLQLWEKAPLEPYATQKHMTYHVVCPD
IEPLTTAAADFFQQLGTVYETCNLGTHSPQNFGSEMDLDSGKSSCSGFVLLDCPQSMKID
SSSASILGSISDYFLSLSNGWDLASYLKSLSKVLKTLNLSSCMTTSTKEGNSGPYTQVVY
VVCPFPEPLAILRTVVESSIAVGASVLSSDKEKRSMMHNQVGKALNHSAAVDETLSNVLT
ISGFSIPKLVLQIVTVDAIFRVTNPPLNELVVLKEIAFTVYNKARRVLRGSNCDVVPSST
SLSGRSHSVLMQMASPLTGMWKDCVGPRLAASSLQRESDLDASLRSSTWENSWQTRSGAL
GCDPSRGGDFLIQDESRCMFEPLFILADPGSLERGVTPPVFGNPASESSKVLADDGTSGS
LMQSSASSGSGDTGPSSQHDSSESDGFGSGNQKTLPSLHCCYGWTEDWRWLVCIWTDSRG
ELLDSYIYPFGGISSRQDTKGLQSLFIQILQQGCQILQSCSADAGKPRDFVIARIGCFFE
LECQEWQKALYAIGGSEVKKWSLQLRRSVPDGMPTNSNGTSMQQQEMTLLQERTLPSSPG
PLYSPHSKSSTFMKSGLGQPSNRKQLMGGVDSSRGLLQWVQSISFISLSVDHSLQLVFQA
DSLASGSTQSNGFLNQPSYLEGYTPVRSLGLTSASYVLIPSPSIRFLPPAPLQLPTCLTA
ESPPLAHLLHSKGSAIPLCTGFVVSKAVPSMRKDSRSISKEEWPSILSVSLVDYYGGNNM
AQDKIVKGMGKLGGRGLSSEAREFELETHLVLESVAAELHALSWMTVSPAYLERRSALPF
HCDMVLRLRRLLHFADKELSRQPEESPS
NT seq
5847 nt
NT seq
+upstream
nt +downstream
nt
atgtggacaaatgtatttaagattggaggtttacatcagatatcgtggtttcagtttctg
ccaaatgaatttgatcctagctccttgtctgacaaaagtgtgaaggtcgacgccagagat
gctgcaacatctgtggtgctgtcatcacacctacagttgcagaaggagggatttcttagt
acatggaccaattcttttgttggaccatgggatccgtcccagggtttgcacaatcctgat
gagaagatcaagctgtggcttttcctccccgggaatcattcatctgttgttgagaaggct
caacctactgtatccaaattgagagtgcttgcatcaggactttgggtggctcctggggac
tcagaagaggttgcagctgcattgtctcaagccttaaggaactgtgtagaaagggcactt
aaaggattttccttcatgagatttggggatgtattctcgagatatcatccatcttcacag
agtgaagaactttacaggaaaggtcagccagtggttgaattcatctttgctgccacagag
gaagcaatttttgtgcatgctgtaatatctgcaaaacatatacgggcactttcaagtggt
gatattgaaatgacattgaagcattccactgatcattttagcaataggcttccagttgtg
atctcccctcatggaatgcttgggaggctcactgggtgttgtccaagtgatcttgtgaag
caagtctatttcagttctgtcaagcttaaagcatcaaatgaagttgtaggtcttccatat
catgctttgcatggctctggttgtcatctgagaggtcaaaattgctatgctgaaattacc
cttggtggtcctattggtggaaatgacaagatactggcacaaaattcaggcttgcataag
aatttgtctaggcataatttgacagaatccatgccagagacgaaggtcaatcaaaaaggg
ccactagagccttcaagagtatttatatatcctgctgaagctgtacttgttccggtgatg
caaacatcattagcgaggtcttgtcttaagagattctggctacaaaactggatagggcca
tcattgtttgcctcatccttctttatgcacagtagtgattgtaaagctgattcaaaagat
ggttctcggctggagtcaaacagccttcgctctcagcatggttatcacagtagcagcagc
agtaacaatagcagtatcagcagtattagtagttcatccagtgatagtgattaccgaact
tctggagctggcgatcttgaggctgatgctgattctttgacatgtagacagtctggttta
tcttccattgaccagtcacatgacattctcaagctgggctctaagcgagtgcattctggg
atgtctgagtcatttaatcaagcaggtgcagttataaacccatctacaagtgattatggc
tcaatagaagttaataactcggccattattggaggttcaaatcatcctgttggatggggt
tgggatgatgatgacagaggtatgggcatggatattcaagcacttctgtcagagtttgga
gattttggtgacttatttgaggatgatgtcttaccttttggggagcctccgggaactgca
gagtcacaagctgttgtaatttcagcacaagattgtggagattttggcagtagccctagt
acatcaatgatggatgtctcagaccagatgcttttgccagtaggttttccctcatttgaa
agttttcactcaccaccagctcccgttgccatggatgattctctgacccaaaatcaggat
ctaacaaagactgtcagtgttccgggtaaagttaactgtcctccagcatctacaagtggt
gaatttgaccatgtagtaaaagctgaagccttaatgacatttgctccagaatatggagca
gttgaaaccccttctgttgaggtcacttcatcaatcttcagaagcccataccttcccaaa
tcacggaaaacagagactgagaattcatgctcaaacaaatatgtatactcagcaacacct
ccttctccttgtgttgatgactctgatgagaagtctggtatcactgtaaacatgaaaata
tgttctgggagacaagacaagattgcggttccccaatcaaagaaatattacactcatatt
gatggtggaattcacaaatctaatggcatgtcatcaacttgtgatgatggcacagcagcg
catgaacctgtaacaatgtcatcctctttggggctcaattccctaaatgctgttaaatcc
gtctcaagcaaaggaagtgatggttcattaagagtggagagttttgttccatctttgaag
cctatgcttgcaacagaattagaatgtctcatgtgtcaggcttttatgtgcaggataaga
catacactattatcttctaggtgtcacttgccagtcggcttgaataggctgtctgcggtt
aatattctgaatcagccacatgttgattcaagcatactgtcagacaatctttcaagtaaa
tctgaggtgaagaagaaagagactataccagtaagaattgctggtgacatggatgcagta
ttgctagatgggaatcttagtgcacctgttggtgtttggcgccctgttactaaaggtgca
aaatctaccacccatcctatggagctctgcccatctattcctcaaaattcatttgttgag
gaaaaccttctatcttatggactgaggcaaccacttcaagaacttcttgatggcttggcc
ttactagttcaacaagctacttcatttgttgatgtggcacttgattctgattgtggagat
ggtgttcatggttggcttgccttgcaagagcagttgaggcgcggattttcttgtggaccg
tctatggttcatgcaggttgtgggggagttttatcttcgtgccattcagtggatattgcg
ggagtggagctagtcgatccactttcagttgatgttcagccatcttttacgattagtctg
ctgcaatcagacataaaagcggctctcaaaactgcttttggcactttggacggtccacta
tttgtatctgactggtgcaaaggtcgcagtctgtcctgtgaagccggatcaatgtgtgat
gaattctatgccgaatcaacagctagtgccagtgaatgtcaagattcttcaaatggggct
agagcagaggaggcaagcgataggaaatcactccaagaagcttgtttatcagagtcagag
cagcaagcaggctcaaagctcaggccaacattggctgtagttccatttcctgctatactt
gttgggtaccaagacgattggcttaagacatctgccagctctctgcaactctgggaaaag
gcgccgcttgaaccatatgctacacagaaacatatgacataccatgttgtatgtccagat
attgaacccctcaccacagcagctgctgatttctttcaacaacttggaactgtgtatgaa
acctgcaatttgggaactcattcacctcaaaatttcggaagtgaaatggatctagattct
gggaagtcttcatgttctggttttgttctacttgattgtcctcaatcaatgaagattgat
agcagtagtgcatctattctgggttcgatcagtgactatttcctctccctgtcaaatggt
tgggatttggcgagctatttgaagtctctttcaaaagttcttaaaactttaaatctcagt
tcatgcatgaccacaagcacaaaagaagggaatagtggtccatacacacaggtagtctat
gtagtctgtcccttcccagagcctcttgcaattctacggactgtagttgaatcttcaatt
gcagttggcgcttctgttctttcttcagataaggagaaaagatcgatgatgcacaatcaa
gttggaaaggccttaaatcattcagcagctgtggacgaaacactatccaatgtcttgact
atttcaggatttagtattcctaaattggtgttgcagattgtaacagtggatgccattttt
agggtaacaaatcctcctcttaatgagcttgttgttctgaaggaaattgcttttacagtt
tacaataaggcccgaagggttttacgaggaagcaattgtgatgtggttccatctagtaca
tccttgtctggtagatctcattcagtcttaatgcaaatggcttcaccattaactgggatg
tggaaagattgtgttggtcctcgactagcagcatcttccctccagagagaaagtgatctt
gatgctagcttgaggtccagtacttgggaaaattcctggcaaacgaggtctggggcactc
ggatgtgatccaagtagaggtggcgattttcttattcaagatgagagccgttgcatgttt
gagccactttttattcttgctgacccgggatctttagaacgtggagtgactcctcctgtt
tttgggaatccagcttcagaatcttcaaaggttttggcagatgatggtacaagtggaagc
ttaatgcaaagttctgcttcttcgggaagtggagatactggaccaagctctcagcacgat
tcatcagagtcagatggatttggatctggcaaccaaaagacactcccgagcttgcattgc
tgctatggctggactgaagattggcgttggttggtgtgtatatggacagactctaggggg
gaattgcttgacagctacatatatccctttggaggaatcagtagcaggcaggatacaaag
ggtctgcagtctctttttatccaaattctgcaacaaggttgtcaaatacttcagtcttgt
tctgcagatgctggcaaaccaagagattttgttattgcacgtattggatgcttctttgag
cttgaatgccaagagtggcagaaagctctatatgcaattggtggttcagaggtgaagaag
tggtctctgcagcttagacgttctgttcctgacgggatgcctaccaatagtaatggaact
tcaatgcagcaacaagaaatgactttattacaagagagaacacttccatcttcgcctggt
cctctgtacagtcctcactcaaagtcttcgacattcatgaaaagtggtttgggacaacct
tcaaacagaaagcaactgatgggaggagtggatagctcgagaggtttgcttcagtgggtg
caaagtatcagttttatctcactatcagttgaccattctctacagctggtcttccaggca
gattcattagcttctgggtcaactcagagcaatggttttctaaaccagccaagttatctt
gaaggatatactcccgtaagatcccttggtttgacatctgcttcctatgttctaattccg
tcacccagcatacgttttctccctcctgcacctcttcagctccccacatgccttaccgct
gagtccccacccctagctcaccttctacacagtaaaggctctgctattcccctttgtact
ggttttgtggtttcaaaagctgttccgtcaatgaggaaagattctaggagcatctcgaaa
gaagaatggccttctatactttccgtgagtcttgttgattattatggaggtaataacatg
gcccaagataaaattgtgaagggcatggggaaattgggaggaaggggcttaagttcagaa
gctagggaatttgaattagagactcatctagttctcgagtctgtggcagcagaacttcat
gctttatcatggatgaccgtaagtcctgcatacttggaaaggagatctgcattgccattt
cactgcgacatggttctgagacttagaaggcttcttcactttgctgataaggagttatct
cgacagccagaggagtcaccgtcatag
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