Coffea arabica (coffee): 140007570
Help
Entry
140007570 CDS
T11342
Name
(RefSeq) nuclear pore complex protein GP210
KO
K14314
nuclear pore complex protein Nup210
Organism
carb Coffea arabica (coffee)
Pathway
carb03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
140007570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
140007570
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
140007570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_GP210_15th
Ig_GP210_16th
Ig_NUP210_1st
Ig_NUP210_7th
Ig_NUP210_5th
Big_2
Ig_NUP210_16th
Ig_NUP210_2nd
Ig_NUP210_15th
Ig_NUP210_3rd
DUF3377
Motif
Other DBs
NCBI-GeneID:
140007570
NCBI-ProteinID:
XP_071906377
UniProt:
A0A6P6VJN6
LinkDB
All DBs
Position
5c:complement(202684..211620)
Genome browser
AA seq
1957 aa
AA seq
DB search
MLLRLATLWFCILFPALLVSDAVASSSVTSGPHLADVNILLPPKMTHPVEYRLQGTDGCF
KWSCDHRDILAVLPEYNSTNRCSTSARLKSIAPYTGRKETAVYATDLNTGMVIRCKVYID
IFSRIQIFHNSIKLDLDGLATLRVRAFDSEENVFSSLVGLQFMWQLMPETDDLPHHIVHV
PLKESPQSDCGGLCGDLDIQVKLEDGGVFSDLYVVKGIEIGHEIVSVHLVEPSFEHIQDK
IILTVAEAMALDPPSPLYVLIGAVVKYSLNVIRGNIPQVVSLPSPWHQWSVLNTSVAQVD
RMTGEAHALDLGVTTVIVEDTRVAGHTQTSSLHVVLPDALLLHILPLSPSGSPVEGMRSI
PSMARWYVVSGRQYLIYVKVFSQSPAGEEIYLTESDDVELYGDQSKFWNVLPVPDSVMVK
GNTRILNAISYGLGKLMAVLRYSSRNDERKEVIKVVQEIMVCDQVKFSMSQGSIDHHRIL
LPWAPGISQELELKVNGGCAMASSDYKWFSSDMAIVSVSASGIVQSRNPGKATIRAVSIY
DSFNYDEMVIEVLIPSSMVMRQNFPVEVVVGSHLQASVTLKMPDGAYFARCDAFSSSIKW
KTESESFTIINATDESLTFGKHEMLELQTSTVGPPCAWADVYASSSGRTTLHATLTKEHQ
QLDHSVSGFIALKASLHIAAYKSLLVHQASDGNQFGGYWFNLAEAEAHNHLDSLFLAPGT
HFDLKLHEGPERWDQGVEFIETVETLDDKNSYLKDGGLVHQVHADHVSQYRIKCEKLGSF
KLVFRRGNLIGDNHPLPAVSEAQLQLVCSFPSSIVLIADEAVNLPEVIESATKADRIHGR
IRATPITVANGRTVRLSAVSISDTGKAFGNSSSLQLNWELINCDGLAFWDDAYNLAITKS
IWERFLVLQNSSGLCTVRATVLGFIDSLNQNSITPFDSPEDALTDAARLQIVSSLRVNPV
FSLLFFSHDARLNLSIAGGSCFLETLVNNSHILEVIQLPVDLRCLQLMLAPKRLGTALVT
VYDIGLAPPLAASSVVQVADIDWIKITSGEEISLMEGNLLSISFLAGTDAGHTFDSSQYL
YMDIHVHFEHHIFELVDDGELQSPTHRSVRAPNFTIQGTHCGVTTLYLSARQHSGHEVLS
QSIRVEVYAPPRIHPSEIFLVPGASYVLKVRGGPRFGAFVKYASMDDETARFQKSLGRIS
AISPGNTTLVATFYEKGDISICQAYGKVRVGVPSAAILNVQSEQLAVGQKMQIFPSLSEG
NLFSFYELCNNYKWNIEDKDILTFRVPDRMQGVKDGIPFPDANKSRYTEYLDKEDLGFLQ
VLEGLSPGKTGVAVTFSCSFTSSGSFSESRSYSANISLWVVPDLPLALGSPITWLLPSHY
TSSDLLPLSSNPCGKGALCCKSTIIYSLLGKCGGETAEVEDEDMFIDGGKIKTKEAESLA
CIQANDRSTGRTEIASCVRVAEVAQVKIVTQEVLVLRLAVGAELDLPIRYYDVLGNPFHE
AYNVAVFEAETNYPDVVTIEDSSDGQGKVHLSAKSPGKALVRVAFINNPQKSDYVMIFVG
AHMYPLNPVLPLGSHLNFSVNGLTDQAFGYWFSANESILDIDKLSGKAKARNEGSTQVHY
ENSDLKLHTVVTVLKGGEVTVDAPTLMLTNASPFPVKGYFFLIKLNDAYNRKYETIGNGK
TLVDCVVDPQFVGFARTWTDPVTNKLYCIFFPYFPEQLVRTAPSSADMRRGLSISINASL
LEDESISGSASVFFVGGFSVLEMDENSLKLNLTSGYNRSFITIVGNTDVIINWHDRDRLS
VRLISGDDSRKGGHALYEVKSLKDESFKDKLIITLQATGQRKEVDVSYEAERTNGAVRNF
GAIMVVVTVFLLFLVIFGTLLYCIRKPGGVESGFARVGGARVAAAAPATPIRSSPLLRDE
QSPRTPQPFIEYVRRTIDETPYYRQDFRRRVNPQNTL
NT seq
5874 nt
NT seq
+upstream
nt +downstream
nt
atgttactacgcttagccacgctttggttctgcattctttttccggcgcttttggtgtcc
gatgcggtggcctcatcgtcggtgacgtctggtcctcacctagccgacgtcaacattctg
ttgcctcccaaaatgactcatcctgttgagtacaggcttcaaggaactgatggctgcttc
aaatggtcatgcgatcatcgtgatattttagctgttttgcctgagtacaattccaccaac
cgttgctctacaagtgcccgcttgaaatcaattgctccttatactggtcgaaaggaaact
gctgtttatgcaactgacctcaatactggcatggtgattcgttgcaaggtttacattgat
atcttctccagaatccagatattccataattccatcaaacttgaccttgatggacttgct
acgcttcgagtccgggcatttgatagcgaagaaaatgtcttttcctcgttagtggggtta
cagttcatgtggcaactgatgcctgaaactgatgacttgccacatcacattgttcatgtt
cctctcaaggaatctccacaaagtgactgtggaggattgtgtggtgacctggacattcaa
gttaagcttgaagatggtggtgtgttttctgacttgtatgttgtgaaaggcattgaaatt
ggccatgaaattgtttctgttcatcttgttgaaccatcatttgagcacatacaagataag
attatcttgactgtagcagaagcaatggctcttgatcctccatcacctctatatgttctt
attggtgctgttgttaaatatagcctcaatgttattcgaggcaatattcctcaagtggta
tctttaccatctccatggcatcagtggtctgttttgaacacttcagtggctcaggtagac
agaatgacaggtgaagctcatgcactcgatttgggggtgacaacagtcattgttgaagac
actagagttgctggtcatacacaaacgtcatccctccatgttgtcttgccggacgcttta
ctgttgcacatattgccactttccccttctggtagccctgtcgagggaatgagatctatt
ccatctatggctcgctggtatgttgtctctggcaggcagtatttgatttatgtgaaagtt
ttttcacagagtccagctggggaagaaatttatctaactgaaagtgatgatgtagaattg
tatggtgaccagtccaagttctggaatgttctccctgtgccagatagtgttatggtaaaa
ggcaataccagaatactcaatgcaatttcttatggtcttggcaaactgatggcagttttg
agatatagcagcagaaatgatgagagaaaggaggtcattaaagttgtgcaggaaatcatg
gtatgcgaccaagtgaagttcagcatgagccaaggcagcattgaccatcacagaattctc
cttccatgggcccctgggataagtcaagaattggagctaaaggtgaatggaggttgtgca
atggcatccagtgactataagtggttttcctcagacatggctatcgtgtctgtatctgca
tctggcatagttcagtcaagaaatcccggtaaagctaccatcagagcggtgtccatttat
gactcattcaattatgatgagatggttattgaagttttaattccttcttcaatggttatg
cggcagaattttcctgtggaagttgtcgttggatcgcatcttcaggcttctgtcacgttg
aaaatgccagatggagcctactttgctagatgtgatgcttttagctcctccattaagtgg
aaaaccgagagtgagtctttcacaattatcaatgcaactgatgagtcacttacttttggc
aagcacgaaatgcttgagctccagacttcgacagttgggcccccttgtgcatgggctgac
gtatatgcttctagttctggtcggacaacgctacatgcaacactaactaaagagcatcaa
cagcttgatcattctgtcagtggatttattgctttaaaggcctcgttgcatattgcagca
tataaatcactcctggtacatcaggcaagtgatggaaaccagtttggtggttactggttc
aacttggctgaagctgaagcccataaccatttggattcactatttcttgcccctggaaca
cactttgatttaaagcttcatgaaggaccagagaggtgggatcaaggggttgaatttatt
gaaactgtggaaactttagatgacaagaattcttatcttaaagatggaggcctagttcac
caagtacatgctgaccatgttagccagtacagaattaagtgtgaaaagttgggatccttc
aagcttgttttcaggcgtggaaatttaattggtgacaaccatcccctgcctgctgtatct
gaagcacagttgcagcttgtgtgttccttcccatcttctattgtactaattgctgatgaa
gctgtaaatttacctgaagtcattgagtctgcaactaaggcagaccgcattcatggaaga
attcgggccaccccgattactgttgcaaatggacggacagttcgactatcagccgtgagt
atcagtgatactgggaaagcttttggaaactcgtcttctctccagttgaattgggagctt
attaactgcgatgggctggctttctgggatgatgcatacaatttagcaataaccaagtcc
atttgggagaggtttttggtcttgcaaaactcatcaggattgtgtactgtgcgtgcaact
gttttagggttcattgattctttaaatcaaaactctattactccttttgatagtccagaa
gatgctctcacagatgctgcacgtttgcagattgtttcttctctaagagtgaatccagtc
ttcagtttgttgttttttagtcacgatgcccggctgaatctctcaattgctggtgggagc
tgttttctggagactttggttaataatagtcatattctggaagttattcaattaccagtg
gatttgcggtgtttgcaactgatgctggcccccaaaaggttgggaactgctctggtgaca
gtttatgatattgggcttgctcctccacttgctgcttcttctgtggtccaagttgctgac
atagactggattaagatcacatcaggggaagagataagccttatggaaggaaatttgcta
tctataagcttcttggctggaactgatgcagggcatacttttgacagttctcagtacttg
tatatggatattcatgttcactttgagcatcatatttttgagcttgtggatgatggtgaa
cttcaaagtccaactcacagatctgttagagcacccaatttcactatacagggcacacac
tgtggggtcacaaccctatatcttagtgctagacagcattctggacatgaagtattaagt
caatcaattagagttgaagtctatgctcctcctaggatacatcctagtgaaattttcctt
gtacctggcgcttcttatgtcctcaaggtaagaggaggcccaagatttggtgcctttgtc
aagtatgctagtatggatgatgaaacagccagatttcagaagtccttgggacgaatttca
gcaatttcacccggaaatactaccttagttgccacgttttatgaaaagggagatatctcg
atttgtcaggcatatggaaaagttagagttggtgttccttctgcagccattttgaatgtt
caaagtgagcaacttgctgttggccagaagatgcaaatatttccttctctgtccgagggg
aatttattttccttttatgagctttgcaataattacaagtggaatattgaagataaagat
attttgactttcagagtgccagatcgcatgcaaggtgtaaaagatggtattccctttcct
gatgcaaataaatctagatataccgagtacttggacaaggaagaccttggttttcttcaa
gtgctggaaggactatctcctggcaagacaggagttgctgtcacattctcttgcagtttt
acgtcttctggttcattttcagaatctaggtcatacagtgcaaatatatctctttgggta
gtacctgatcttccccttgctttgggatcaccaataacctggctcctcccttctcattat
acgtcatcagatctattgcctttatcttcaaatccttgtggcaaaggggcattgtgttgt
aaaagcacaatcatttactctttactgggaaaatgtggaggagagacagcagaggtcgaa
gatgaagacatgttcattgatgggggtaaaattaagacaaaagaagctgaaagtcttgca
tgtattcaggcaaatgataggtcaaccggaagaactgagattgcttcttgtgtaagagtt
gcagaggtggctcaagtgaaaattgtaacgcaggaagttctggttcttagacttgctgta
ggtgctgaacttgatctgccaatcagatactatgatgttctaggtaacccttttcatgaa
gcttataatgttgctgtctttgaagctgaaactaattatcctgatgttgtcaccattgaa
gactcctctgatggtcaggggaaagtccacctcagcgcaaaaagccctggtaaagctctt
gtccgggtagcattcatcaataacccacagaagtcggactatgtgatgatttttgtgggt
gctcatatgtatcctctaaatccagtccttcccttaggaagccatcttaacttcagtgta
aatggcctgactgatcaagcatttggctactggtttagtgccaatgaaagcattctggac
attgacaagttatctggaaaagccaaagccagaaacgaaggttctactcaagttcattat
gaaaattcagatttgaaactgcatacagtggttaccgttctaaaagggggagaggttact
gttgatgctcccacgttgatgctcactaatgcatctccttttccagttaaaggatatttc
tttctcattaaactaaatgatgcttataaccgcaagtatgaaactattggaaatggcaag
acattagttgattgtgtggtggatccacagtttgttggattcgcaaggacttggactgat
cctgtcactaataagttgtactgcatcttctttccttactttccggaacaattggtacgc
actgctcccagttctgcggacatgagacgaggtttatccatttccattaatgcttcattg
ctggaagacgagagcatatcaggatctgcatctgtattctttgtgggaggattttctgtg
ttggaaatggatgaaaattctctaaagctaaatctgacttcaggctataacagaagtttc
ataaccattgtgggtaatacagatgttatcatcaactggcatgatcgagataggctgtct
gtcagactcatctctggggatgattccagaaaaggagggcatgctctctacgaggtcaaa
agtctcaaagatgagagttttaaagataaactaatcattaccctccaagcaacaggtcag
aggaaagaggtggacgtcagctacgaagctgagagaaccaatggtgcagtaagaaacttc
ggtgccatcatggttgtggtcacggtgtttttactatttttggtaatctttggaactttg
ctgtactgcatacgcaaaccaggtggcgtagaatcaggttttgctcgtgttggaggtgct
cgtgtggcagcagctgcacctgccactcctattcgcagtagtcctcttcttcgggatgaa
caatctcctcggacgcctcagcctttcatcgagtacgttaggagaacaatagatgaaact
ccttactacaggcaagattttaggagaagggtcaatccccagaacaccttgtag
DBGET
integrated database retrieval system
