Chitinimonas arctica: FNU76_22415
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Entry
FNU76_22415 CDS
T06695
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cari
Chitinimonas arctica
Pathway
cari03030
DNA replication
cari03410
Base excision repair
cari03420
Nucleotide excision repair
cari03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cari00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FNU76_22415 (ligA)
03410 Base excision repair
FNU76_22415 (ligA)
03420 Nucleotide excision repair
FNU76_22415 (ligA)
03430 Mismatch repair
FNU76_22415 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cari03032
]
FNU76_22415 (ligA)
03400 DNA repair and recombination proteins [BR:
cari03400
]
FNU76_22415 (ligA)
Enzymes [BR:
cari01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FNU76_22415 (ligA)
DNA replication proteins [BR:
cari03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FNU76_22415 (ligA)
DNA repair and recombination proteins [BR:
cari03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FNU76_22415 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FNU76_22415 (ligA)
MMR (mismatch excision repair)
DNA ligase
FNU76_22415 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FNU76_22415 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
BRCT_2
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
QDQ28883
UniProt:
A0A516SL79
LinkDB
All DBs
Position
4930081..4932168
Genome browser
AA seq
695 aa
AA seq
DB search
MSITFSERAAQLRALLNRYGVEYHVYDAPSVPDAEYDRLYRELEALEAAHPELKVSDSPT
QRVGGRPLSVFEQVEHTVSMLSLNNAFADEDVQAFDKRIRETLGTERVAYDVGPKFDGLA
ITLRYEHGLFVQGATRGDGTTGENVTANLKTVRAIPLRLDCAHPPALLEVRGEVLMLRKD
FERLNSEQAARGDKLFANPRNAAAGSLRQLDSRITASRRLMFFAYGLAQLDGAAWPDSQS
AIMAMLKTFGFPVCEYAERVEGVAGLLAYYQRVGAMRAAMPFDIDGVVYKLDMLADQARL
GYVSRAPRWAIAHKYPAEEALTVVEAIDIQVGRTGTLTPVARLQPVFVGGVTVTNATLHN
LDELHRKDVRLFDTVVVRRAGDVIPEVVGVLLERRPMMDAPADSANERTPQHPPFAMPAA
CPVCGSHVSREEGEAAYRCTGGLVCSAQRKQALLHFAGRRAMDIEGLGDKLVEQLVDVGL
VRTPADFYKLGIVKLAELERMAEKSAANLLAGIAKSRDTTLARFIYALGIRNVGEATAKD
LARHFGKLDGLVAAATVADEAAALAALQAVPDVGPVVAQSIRDFLLEGHNVEVIEQMRAA
GVSWPEHEPSEALASGPLLGKTLVVTGTLPTLSREDAKALIEAAGGKVAGSVSKKTNYLV
AGEAAGSKLDKAQELGVPILDEAGLQALLTAPQDN
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgagtatcactttctccgaacgcgccgcgcaattgcgcgcgctgctgaaccgctatggc
gtcgaataccacgtatacgacgcgcccagcgtccccgacgccgagtacgaccgcctttac
cgcgagctggaagcgcttgaagcggcccatcccgaattgaaggtgtccgactcgccgacc
cagcgggtgggtgggcggccgctgtcggtattcgagcaggtcgaacacacggtttccatg
ctgtcgctgaacaacgcctttgccgacgaggacgtgcaggctttcgacaagcgcatccgc
gaaaccctcggcaccgagcgggtcgcctacgatgtcgggcccaagttcgacggcctggcc
atcaccctgcgttacgagcacggcctattcgtgcagggcgctacccgcggcgatggcacc
acgggtgagaacgtcaccgccaatctcaagaccgttcgcgcgattccgctgcgcctggac
tgcgcgcatccgccggccttgttggaggtgcgcggcgaggtgctgatgcttcgcaaggat
ttcgaacgcctcaatagcgagcaggccgctcgcggcgacaagcttttcgccaatccgcgc
aatgccgcggccggtagcctgcggcagctcgattccaggatcaccgccagccggcggctg
atgttttttgcttatggcctggcgcaactggacggcgccgcatggcccgatagccagtcg
gccatcatggccatgctgaagactttcggctttcccgtctgtgaatacgcggaacgggtc
gagggcgtggcgggcttgctggcctactaccagcgggtcggtgcgatgcgggcggcgatg
cccttcgatatcgatggcgtcgtttacaaactcgatatgctggccgatcaggccaggctg
ggctatgtgtcgcgggcgccgcgctgggcgattgcccacaaatacccggcggaagaggcg
ctgaccgtggtcgaggccatcgatatccaggtaggccgtaccggtacgctgacgccggtg
gcgcggctgcagccggtctttgtcggcggtgtcaccgtcaccaacgccacgctgcacaat
ctggatgagttacatcgcaaggatgtgcgcttgttcgatacggtggtggtgcgacgggcc
ggcgacgtgatccccgaggtggtgggcgtcttgctggaacgccggcccatgatggacgcc
ccggccgactcggccaatgaacggaccccgcaacacccccctttcgccatgccggccgcc
tgtcccgtgtgcggctcgcatgtgagccgcgaggaaggcgaggcggcctatcggtgtacc
ggcggcctggtttgctcggcccagcgcaagcaggcgctgctgcatttcgccggtcgccgc
gcgatggatatcgaaggcttgggcgacaagctggtggagcagctggtcgatgtcggcctg
gtgcgcacgccggcggatttttacaagctgggcatcgtcaaactggccgagctggagcgc
atggccgagaagtcggccgccaatttgctggccggtatcgccaaaagccgggacaccacg
ctggcgcgttttatctacgccttgggtatacgcaatgtcggcgaagcgaccgccaaggat
ctggcgcgtcacttcggcaagctggatggcttggtggcggctgccaccgtggccgatgag
gccgccgccctggcagcgctgcaagcggtgccggacgtcgggccggtggtggcgcaaagt
attcgcgacttcctgctggaggggcacaatgtcgaggtgatcgagcagatgcgcgctgcc
ggcgtgagctggccggaacatgaacccagcgaggcgcttgccagcggaccgctgctgggc
aaaaccctggtggtcaccggtacgttgcccacgctcagccgcgaagatgccaaagccttg
atcgaagccgccggcggtaaggtggccggctccgtgtcgaagaaaaccaattacctggtg
gccggcgaagccgcgggttccaagctggataaggcacaggaactgggcgtgccgatactg
gatgaagccggattgcaggctttactgaccgcgccccaggacaattga
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