Caproicibacterium argilliputei: PXC00_06590
Help
Entry
PXC00_06590 CDS
T09713
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
carl
Caproicibacterium argilliputei
Pathway
carl03030
DNA replication
carl03410
Base excision repair
carl03420
Nucleotide excision repair
carl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
carl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PXC00_06590 (ligA)
03410 Base excision repair
PXC00_06590 (ligA)
03420 Nucleotide excision repair
PXC00_06590 (ligA)
03430 Mismatch repair
PXC00_06590 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
carl03032
]
PXC00_06590 (ligA)
03400 DNA repair and recombination proteins [BR:
carl03400
]
PXC00_06590 (ligA)
Enzymes [BR:
carl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PXC00_06590 (ligA)
DNA replication proteins [BR:
carl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PXC00_06590 (ligA)
DNA repair and recombination proteins [BR:
carl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PXC00_06590 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PXC00_06590 (ligA)
MMR (mismatch excision repair)
DNA ligase
PXC00_06590 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PXC00_06590 (ligA)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
5_3_exonuc
Auto_anti-p27
zf-NADH-PPase
Motif
Other DBs
NCBI-ProteinID:
WOC33529
UniProt:
A0AA97DAZ7
LinkDB
All DBs
Position
1360356..1362338
Genome browser
AA seq
660 aa
AA seq
DB search
MQQEEAKKRILELRKQIQYHNQKYYVEDAPEIDDFEYDMLYRELQNLEAAFPQFVVPNSP
TQKVGGAPLAQFSKVRHEVVMESLHDSFSHEELREFDRRVREAVGDVTYVVEPKFDGLSV
SLEYRDGVFTRGSTRGDGTVGEDVTENLRTIRTIPKKLKEPVPFLEVRGEVYMSHESFFK
LCAQQELAGEKPFKNPRNAAAGSLRQKDSRVTASRVLDIFVFNVQQISGDVLSSHEEALD
YLKRLGFTVSPFYTACRTIDEAIREVERIGEMRGSLGYSIDGAVIKVNRFSQRQELGSTA
KFPKWAEAFKYPPEEKETKLLRIEVNVGRTGVLTPTGVFEPVTLAGTTVSRATLHNQDFI
SEKDIRVGDVVKLRKAGEIIPEVVCVVSHADHAEPYRLPETCPSCGGPVIREEGESAVRC
TNAACPAQLARHLIHFVSRDAMDIDNCGPAVLEQLIAQGLVHSPADLYHLTLPQLTRMER
MGEKSAQNLLDGIARSRQNDLSRLLFAMGIPHIGQKAAKLLAARFGNMTNIFEATAADIA
AIDGYGSIMAESVQEFFSLTATAELVAQLRDAGVNMESSLQVTDSRFAGKTFVLTGTLSH
RTRTEATALIEQFGGKVTGSVSKKTSYVLAGEAAGSKLDKAQKLGVPVLTEADFEVLLQP
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgcagcaggaagaagcaaaaaagcgcattttggagctgcgcaaacaaattcagtatcat
aaccaaaaatactatgtggaagacgcgccggaaatcgatgatttcgagtatgatatgctg
taccgcgaactgcagaatctggaggcggcatttccgcagtttgtggtgccgaattcgcca
acccagaaagttggcggcgcacctctggcgcagttcagcaaggtacggcatgaggttgtg
atggaaagcctgcacgattccttttcccatgaggaactgcgggaatttgaccggcgtgta
cgggaagcggtcggggatgtcacctatgtggtagaaccgaagtttgatggtctgtcggtt
tctctggagtatcgtgacggtgtctttacacgcggctccacccgcggtgacggtaccgtc
ggggaggatgttacagaaaacctgcgcaccattcgcaccattcccaaaaagctgaaagag
ccggttccgtttttggaagtgcgcggcgaagtatatatgtcacatgaaagcttttttaag
ctgtgtgcgcaacaggagctggcaggagagaagccatttaagaatccgcggaatgccgct
gcaggctccctgcggcaaaaggacagtcgcgttacagcttcccgcgtcctggatattttt
gtttttaatgtgcagcagattagcggcgacgtcctaagcagccatgaagaagcgctggac
tatctgaagcgcctgggcttcacggtttcgccgttttataccgcttgccgcacaatcgat
gaagcaattcgggaagtggagcgcattggtgaaatgcgcggtagtctggggtattctatc
gacggtgcagtcatcaaggtgaatcgcttttcgcagcggcaggaattgggcagcaccgca
aaattccctaaatgggcggaagcgtttaaatatccgccggaagaaaaggaaacaaagctg
ctgcgcattgaggtgaatgtcggcaggaccggtgtcttgacaccgaccggcgtttttgaa
ccggtcactctggcgggcacaacggtcagccgcgcgactctgcacaatcaggacttcatt
tcggaaaaagatattcgcgtcggtgacgtggtgaagttgcgaaaagccggcgagattatt
cccgaagtagtttgcgtggtttcgcacgcagaccatgcggagccgtaccgtttgccggaa
acgtgcccgtcctgcggcggcccggtcatacgggaagagggcgagtccgccgtgcgctgt
accaacgcggcgtgtccggcacagcttgcccgccatctgattcattttgtcagccgcgat
gccatggacatcgacaactgcgggccggctgttttggaacagcttattgcgcaggggttg
gtgcattctccggctgacctgtatcatttgaccctgccgcagttgacccggatggagcgc
atgggtgaaaagtcggcgcagaacctgctggacggcattgcgcgcagcaggcagaatgac
ctttcgcgcttgctttttgccatgggaattccccatatcgggcaaaaggcagccaaactg
ctggcggcacgcttcgggaacatgacaaatatttttgaagccactgctgcggatattgcc
gcgatcgacggttacggaagcattatggcggaaagcgtgcaggaatttttcagcttgaca
gcaaccgcagaactggtggcacaactacgtgatgccggtgtcaatatggaaagcagcctg
caggtgacggacagccgctttgccggaaaaacatttgtgctgaccggaacactttcacac
cgaacacgcacagaagctacggctctgattgaacagtttggcggcaaagtgaccggcagc
gtcagcaagaagactagctatgtgcttgccggcgaggcagctggcagtaaactggacaag
gcacagaagctgggggttcccgtccttacggaagctgactttgaggtgctgctgcagccc
taa
DBGET
integrated database retrieval system
