Carnobacterium sp. PL17GRE32: FPV25_02940
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Entry
FPV25_02940 CDS
T06316
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
carn
Carnobacterium sp. PL17GRE32
Pathway
carn03030
DNA replication
carn03410
Base excision repair
carn03420
Nucleotide excision repair
carn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
carn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FPV25_02940 (ligA)
03410 Base excision repair
FPV25_02940 (ligA)
03420 Nucleotide excision repair
FPV25_02940 (ligA)
03430 Mismatch repair
FPV25_02940 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
carn03032
]
FPV25_02940 (ligA)
03400 DNA repair and recombination proteins [BR:
carn03400
]
FPV25_02940 (ligA)
Enzymes [BR:
carn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FPV25_02940 (ligA)
DNA replication proteins [BR:
carn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FPV25_02940 (ligA)
DNA repair and recombination proteins [BR:
carn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FPV25_02940 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FPV25_02940 (ligA)
MMR (mismatch excision repair)
DNA ligase
FPV25_02940 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FPV25_02940 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH_3
HHH_8
RNA_ligase
VCPO_N
BRCT_2
HHH
Motif
Other DBs
NCBI-ProteinID:
QEM53956
UniProt:
A0A9W7VQQ5
LinkDB
All DBs
Position
666257..668269
Genome browser
AA seq
670 aa
AA seq
DB search
MTKDNQQSIDVARIEALTHLLNDYAYQYYALDNPTISDTEYDKLYRELQDLEAKYPTFIQ
AESPTQRVGDAVSEAFTKVTHSQPMMSLGNAFNFEEVAKFVADAKKNVGEHIRFVCELKI
DGLSVAIQYENGRYVRAATRGDGVVGEDITNNVRTIKSVPMKLRQDIDIEVRGEIYMPKD
AFLALNEKREEAGLPTFANPRNSAAGSIRQLDSKVTASRNLNIFLYSGVFSDQLPIKSQQ
DLFQHFPDYGLRVNPLTRVCETFEEIQAYIEEMTAKRHELSYGIDGIVIKVDDFSDQETL
GYTVKAPKWAIAYKFQAEEVETTIHDIEWTVGRTGVVTPTAIMEPVLLDGSTVQRASLHN
MDLIEAKDIRLNDTVVIHKAGDIIPEVVTVVLDKRPEDSTPYPKPTTCPVCHSDLVHLED
EVALRCVNPACPAQAKEKLYHFVSRNAMNITGVGPSVLEQMYDKANVHSPADLYQVKKDQ
LMALDKVGDKASDKIIQAIEASKENSLERLLFGLGIRHVGAKAARQIAEVYPSMQEIMTK
EITDLTNIEGIGETIADSIVAFFATDGARETIEALVENGVNMKYKGPVKAEVEAIDSFWA
GKTIVLTGKLSQYTRPEAKKAIEALGGNVTGSVSKKTDILVAGEDAGSKLAKAENLGVTV
FSEQDMVDKL
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaggataaccaacaaagtattgatgttgcgcgtattgaagccttaacccatctc
ttgaatgactatgcctaccaatactatgccttagataatccaacgatttcggataccgaa
tacgacaaactttaccgtgagttacaggatttagaagccaagtacccaactttcattcaa
gctgaatcgccaacgcaacgggtgggggacgctgtgtccgaagcctttactaaggtaacc
cattcacaacctatgatgtccctaggtaatgcctttaattttgaagaagtagctaaattt
gtagcagatgcaaagaaaaatgttggcgaacatatacgctttgtatgtgagttgaaaatt
gatggtttatcagtagccattcaatatgaaaatggccgttacgtccgggcagctactcgg
ggggatggtgttgttggggaggatattactaacaatgttcgtaccattaaatcagtccct
atgaaacttcgccaagatattgatatcgaggtgcgcggcgaaatctacatgcctaaggat
gcctttttggccttaaatgaaaaacgtgaagaagcaggcttgccaactttcgctaacccg
cggaattcagctgctggatcaatccgtcaattggattcaaaagtcacagccagtcgtaac
ttgaatattttcttatactctggggtcttttctgatcaattaccgatcaagagccaacaa
gacttattccaacatttcccagactatggcttgcgcgtaaacccgttaaccagagtgtgt
gaaactttcgaagaaattcaagcctacattgaagaaatgactgctaaacgtcacgaattg
tcttacggtattgatgggattgttatcaaggtagacgattttagtgaccaagaaacttta
ggctatacggttaaggcaccgaaatgggcgattgcctacaaattccaagccgaagaagtg
gaaacgaccatccatgatatcgagtggacggttgggcgtacaggtgtagtgactccaact
gccattatggaaccagttttattagacgggtcaaccgttcaacgggctagcctccacaat
atggacttgattgaggctaaagatatccgcctaaatgatacagtggtcatccataaggcg
ggggatattattccagaagtggtgacggttgttttagataagcgacctgaagattcaacg
ccgtatcctaaaccgacgacttgtccggtttgccatagcgacctagtccatttagaggat
gaagtggccttgagatgtgtgaacccagcttgtccagcccaagcaaaagagaagttgtat
catttcgtgtctcgaaacgccatgaatattaccggtgttggcccatctgtcctagaacaa
atgtatgacaaggccaatgtccatagtccagctgacttataccaagtcaagaaagaccaa
ttgatggccttagacaaggttggggacaaggcgtcagataagattatccaagctattgaa
gcttccaaagaaaactcacttgagcgcttattatttggtttaggcattcgtcatgttggg
gcgaaagctgctcgtcagatagctgaagtatatccaagcatgcaagaaattatgaccaag
gaaataaccgatttaaccaatattgaaggaattggcgaaaccatcgcggattctatagtt
gccttttttgccacagacggcgcgcgcgaaaccattgaggccctagtggaaaacggcgtc
aacatgaagtataaggggccggttaaagcagaagttgaagccatcgattccttctgggcc
ggcaaaacaatcgtcctaactgggaaattatctcagtacacaagaccggaagctaagaaa
gctatcgaagccttaggtggtaacgttacagggtccgtttctaagaagacggatatccta
gttgccggggaagatgcagggtcaaaattggccaaagcagaaaacttaggcgttactgta
ttttctgaacaagacatggttgacaagttataa
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