Citrobacter arsenatis: E1B03_25695
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Entry
E1B03_25695 CDS
T07503
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cars
Citrobacter arsenatis
Pathway
cars03030
DNA replication
cars03410
Base excision repair
cars03420
Nucleotide excision repair
cars03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cars00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E1B03_25695 (ligB)
03410 Base excision repair
E1B03_25695 (ligB)
03420 Nucleotide excision repair
E1B03_25695 (ligB)
03430 Mismatch repair
E1B03_25695 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cars03032
]
E1B03_25695 (ligB)
03400 DNA repair and recombination proteins [BR:
cars03400
]
E1B03_25695 (ligB)
Enzymes [BR:
cars01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
E1B03_25695 (ligB)
DNA replication proteins [BR:
cars03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
E1B03_25695 (ligB)
DNA repair and recombination proteins [BR:
cars03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
E1B03_25695 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E1B03_25695 (ligB)
MMR (mismatch excision repair)
DNA ligase
E1B03_25695 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
E1B03_25695 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
RNA_ligase
DUF3701
Motif
Other DBs
NCBI-ProteinID:
QBM25645
UniProt:
A0A4P6WUG2
LinkDB
All DBs
Position
complement(5116190..5117869)
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AA seq
559 aa
AA seq
DB search
MGLWKCIGLIFLVWHLPIWAVCPVWSPARANEEISRLQQQITQWNDSYWKQGESAVDDGV
YDQLNAQLIQWQRCFGDESPPELSAPPISGTVSHPVPHTGVRKLADKQALQQWMKARSDL
WVQPKVDGVAVTLVYRNGNLIQAISRGNGLKGEDWTQKVLQIPSVPHSTTGQLANSTLQG
EIFLQQQGHIQQQKGGMNARSKVAGMMMRQGNPEILRSLAIFIWAWPDGPALMPERLEQL
TAAGFSFTQRYTQAVKDAGDVEQARARWWASALPFVTDGVVVRTGKEPRAQYWLPGQGDW
LAAWKYPPVARVSEVTGIQFSVGKTGKIAVVALLTPVMLDDKRVQRVNIGSVRRWNEWDI
APGDQILISLAGQGIPRIDEVVWRSTQRIKPVPPVGRFNSLTCFYATAECQEQFVARLVW
LGDKEVLGLEGIGEAGWRELNQTYRFEHIFSWLGLTQAQLQSIFGASKGEKLWHQFNLSR
HLPFTRWVIAMGIPLTQATLNASRDSSWQQLQARSEQSWRQLPFMGERRARQVMQWLEDS
EITALSNWLAAQRIVGFMP
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgggattatggaaatgcataggactgatttttctggtgtggcatttaccgatatgggcg
gtatgccccgtctggtcaccagcccgggcaaacgaagaaatttcacgactacagcagcag
ataacacagtggaatgacagttactggaaacaaggtgagagcgccgtagatgacggagtt
tacgaccagctcaatgcccaacttatccaatggcagcgctgttttggtgatgaatctcca
ccagaactgtctgcgcccccaataagtggcaccgtttcacatcctgttccccacacggga
gtccgcaaacttgccgataagcaagcgctacagcaatggatgaaagctcgaagcgatctc
tgggtgcagccgaaggtggacggcgtggcggtcacgctggtctatcgcaatggaaatctg
atacaggcgattagccgtggtaacggcctgaaaggtgaagactggacgcaaaaggttctt
cagatcccttcagtaccgcactccaccacagggcagctcgctaacagtacgttgcaaggg
gagatatttttacagcagcaggggcatattcagcaacagaaaggaggaatgaacgcccgc
tcaaaggttgctggaatgatgatgcgccagggcaacccggaaatattacgctcgctggct
atttttatctgggcctggcctgatggtccggcgctcatgcctgaaaggctggagcagctc
actgctgccgggttcagtttcacgcagcgctatactcaggcggtgaaggatgcgggtgat
gtcgagcaggcgcgcgccaggtggtgggcttcagcattaccttttgtcaccgatggcgta
gtggtgcgaacgggaaaagaaccgcgggcgcaatattggctgcccggacagggtgactgg
ctggcggcgtggaaatatcctcctgtggccagggtatcggaggtaactggcattcagttc
tccgttggcaaaaccgggaaaattgcggtggtggcattgctgaccccagtcatgctggat
gataagcgggtgcagcgcgtcaatattggctctgtacggcgctggaatgaatgggatatc
gcgcctggcgatcagattctgataagccttgccggacaggggatcccccgtatagatgag
gtggtctggcgcagtacccagcgtattaagccagtgccccctgtgggacgcttcaattca
ttaacctgtttttatgccacagcggagtgccaggaacagtttgttgccagactggtgtgg
ctgggagataaagaggttctggggctggagggtatcggcgaagcgggatggcgggagctc
aatcagacgtatcgctttgaacatatcttttcctggctcggattaactcaggcgcaatta
cagtccatatttggcgcgagcaaaggtgagaagctgtggcatcagttcaacctgtcgcgc
catctcccgttcacgcgctgggtgattgccatgggaataccgttaacacaggcaacgcta
aatgccagtcgggatagttcgtggcagcagttacaggcgcgcagtgaacaaagctggcgg
cagcttcctttcatgggggagcggcgggcacggcaggtgatgcagtggctggaggatagt
gaaatcactgcgctgagcaactggttagctgctcagcggatcgtgggctttatgccttaa
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