Cryobacterium arcticum: PA27867_2032
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Entry
PA27867_2032 CDS
T04435
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cart
Cryobacterium arcticum
Pathway
cart03030
DNA replication
cart03410
Base excision repair
cart03420
Nucleotide excision repair
cart03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cart00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PA27867_2032
03410 Base excision repair
PA27867_2032
03420 Nucleotide excision repair
PA27867_2032
03430 Mismatch repair
PA27867_2032
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cart03032
]
PA27867_2032
03400 DNA repair and recombination proteins [BR:
cart03400
]
PA27867_2032
Enzymes [BR:
cart01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PA27867_2032
DNA replication proteins [BR:
cart03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PA27867_2032
DNA repair and recombination proteins [BR:
cart03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PA27867_2032
NER (nucleotide excision repair)
GGR (global genome repair) factors
PA27867_2032
MMR (mismatch excision repair)
DNA ligase
PA27867_2032
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PA27867_2032
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
HHH
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
ANP72984
UniProt:
A0A1B1BKB8
LinkDB
All DBs
Position
1:complement(2287416..2289695)
Genome browser
AA seq
759 aa
AA seq
DB search
MPDATGASPAAALAAAGQEASSLTTRILEARDAYYERNEVVISDAEYDGLIHRLEELERL
FPELASQDSPTQTVGGRAETTLFDPVEHAERMLSLDNVFSLEEFEAWAAKVERDAGRRVH
YLCELKIDGLAINLRYENGVLISAATRGDGVVGEDVTENIRLVPGIPARLSGTGHPPLME
VRGEVFFPVESFRELNAAQSAAGERVFANPRNAASGSLRQKAESKNADQLALMKARLGRL
RMLVHGIGAWQQPGADSQSGVYALLAGWGLPTSPHFKVVAEAGEASAFIEYFGEHRGSVE
HEIDGIVIKVDELALHDELGATNRAPRWAIAYKYPPEQVNTKLLDIVVSVGRTGRATPFA
VMEPVRVAGSVVRQATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEVLGPVVELRDGTERE
FVMPTECPVCGTPLRAAKEGDIDLRCPNARSCPAQVRGRVEHIGSRGALDIEVLGEVTAA
ALTQPTVPETPPLDTEAGLFELTIDDLLPISVVVRDAETGLPREDEDGTARQRTPFRRNP
TAAEKKAGLEGPQPSSNAVKLIAEIELAKTKPLARILVALNIRHVGPVAARALATHFGSL
DAIRAASREELAEVDGVGGIIADAVIDWFDVDWHREIVERWAAAGVQFATPGHPGPGAAA
AAGGVLTGLTVVATGSLEGFTREGASEAIIAAGGKNASSVSKKTDFVAAGPGAGSKLAKA
EALGVRIIDADEFRILLEQGPAGLPEPVATVTGPEADAG
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgcctgacgccaccggagcgtcacccgcggccgcgctggccgcggccggccaggaggcg
tcgagcctgaccacccgcatcctcgaggcgcgcgacgcctactacgagcgcaacgaggtg
gtcatctccgacgccgagtacgacggcctgattcaccgcctcgaagaactcgaacggctc
ttccccgaactcgccagccaggacagccccacccagaccgtgggcggccgcgccgagacc
accctgttcgaccctgtggagcacgccgagcggatgctcagcctcgacaacgtgttctcc
cttgaggaattcgaggcctgggcggccaaggtggagcgcgacgccggacgccgggtgcac
tacctctgcgaactcaagatcgacggcctggcgatcaacctccgctacgagaacggggtg
ctcatcagtgccgccacccgcggcgacggggtggtcggcgaggacgtcaccgagaacatc
cgcctcgtgccgggcatcccggcacgcctgagcggcaccgggcacccgccgctgatggag
gtgcgcggcgaggtgttcttccccgtcgagtcgttccgtgagctcaacgccgcccagagc
gccgccggcgagcgggtcttcgccaacccccggaacgccgccagtgggtcgctccgccag
aaggccgagagcaagaacgccgaccagctcgccctgatgaaggcccggctcggccggctg
cggatgctcgtgcacggcatcggcgcctggcagcagcccggcgcggactctcaatccggg
gtttacgccctgctcgccggctggggcctgcccaccagcccccacttcaaggtcgtcgcc
gaggcgggcgaggcatccgctttcatcgagtacttcggtgaacaccgtggcagcgtcgag
cacgagatcgacggcatcgtgatcaaggtcgacgagctcgcgctgcacgacgaactcggc
gccaccaaccgggctccgcgctgggcgatcgcctacaagtacccgccggagcaggtgaac
accaagctgctcgacatcgtcgtgagcgtcggccgcaccggccgggccaccccgttcgcc
gtgatggaacccgtgcgggtcgccgggtccgtggtacgccaggccaccctgcacaaccag
gacgtcgtcaaggccaagggcgtcctcatcggtgacaccgtcgtgctgcggaaggccggc
gacgtgatccccgaggtcctcggcccggtggtggaactgcgcgacggcaccgaacgcgag
ttcgtgatgcccacagagtgcccggtctgcggcaccccgctcagggctgccaaggaaggc
gacatcgacctgcgctgccccaacgcccgcagctgccccgcccaggtgcgaggccgggtc
gagcacatcggatcccgcggcgctctggacatcgaggtgctcggtgaggtcaccgcggcc
gcgctcacccagccgaccgtgccggagaccccgccgctggacaccgaggcgggcctgttc
gagctcaccatcgacgatctgctgccgatcagcgtggtcgtgcgcgacgccgagaccggt
ctgccccgcgaagacgaggacggcacggcgcgccagcgcaccccgttccgccgcaacccc
acggcggccgagaagaaggccggccttgaaggtccgcagccgtcctccaacgccgtgaag
ctcatcgccgagatcgagctggccaagaccaaacccttggctcggatcctggtggcgctg
aacatccggcacgtcggaccggtggccgccagggcccttgccacgcatttcgggtcgctg
gacgccatccgcgccgccagccgggaggaactcgccgaggtcgacggggtcggcggaatc
atcgccgacgccgtgatcgactggttcgacgtggactggcaccgcgagatcgtggaacgg
tgggccgcggccggcgtgcagttcgcgacgcccgggcatccgggcccaggcgccgcagcc
gcggccgggggagtgctcaccgggctgaccgtcgtcgcaaccgggtcgctcgagggcttc
acccgcgagggcgcctcagaggcgatcatcgccgccggcggaaagaacgcgtcgagcgtg
tcgaagaagaccgacttcgtggccgcgggcccgggtgccggctccaagctggccaaggcc
gaggcactcggggtgcgcatcatcgacgccgacgagttccggatcctgctcgaacagggc
ccggccgggctaccggaaccggtagctaccgtgaccggaccggaggccgacgccggctag
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