Clostridium asparagiforme: NQ535_12240
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Entry
NQ535_12240 CDS
T08571
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
casp
Clostridium asparagiforme
Pathway
casp03030
DNA replication
casp03410
Base excision repair
casp03420
Nucleotide excision repair
casp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
casp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NQ535_12240 (ligA)
03410 Base excision repair
NQ535_12240 (ligA)
03420 Nucleotide excision repair
NQ535_12240 (ligA)
03430 Mismatch repair
NQ535_12240 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
casp03032
]
NQ535_12240 (ligA)
03400 DNA repair and recombination proteins [BR:
casp03400
]
NQ535_12240 (ligA)
Enzymes [BR:
casp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NQ535_12240 (ligA)
DNA replication proteins [BR:
casp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NQ535_12240 (ligA)
DNA repair and recombination proteins [BR:
casp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NQ535_12240 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NQ535_12240 (ligA)
MMR (mismatch excision repair)
DNA ligase
NQ535_12240 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NQ535_12240 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
PTCB-BRCT
HHH_5
HHH_2
BRCT_2
Zn_ribbon_GRF_2
Nlig-Ia
Ogr_Delta
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
UWO79006
LinkDB
All DBs
Position
2648682..2650703
Genome browser
AA seq
673 aa
AA seq
DB search
MNQELIRKQQDLTARLNRYRHEYYNLNAPSISDAVYDRLFEELQDLERQTGIQMANSPTS
TVGYPAISKLEKTNHPIPLLSLDKEKNIVEVCRFMGEHQVMFMLKLDGLTIKLTYEGGEL
LEAATRGDGEVGEIVTHNTRAIGGIPAHIRYEDRLVITGEAFIRPSDFEQLKASLVDNNG
ETYKNGRNLAAGSVRLLDAKTCMERRLMFMPFTVLEGFENLPRKSERLKELSALGFTPCK
YLVTKRTLTQAEAEDGIKQLQQYARDKDIPIDGIVVTYNDVAFAKSCGRTGHHYKDGLAF
KFEDDLFETKLQMIEWTPGRTGEIAPVAVFAPVEIDGCEVSRASLHNLSFIEDLELMPGN
RILVSKRNLIIPHVEDNLDRGGFVLESAYPHRCPCCGEPTRIHETRGRNENGEERTIKTL
FCDNAGCETRKLKQFVHFVGKKAMNIEGLSEATLEKLIGRGWIHSYLDIYRLDQHKDELV
RMDGFGERSWQRLWSAIQQSRNTTFERYVIAMDIPMIGNTASGVLCQVFHGNLDEFRDAV
YAGYDFRQLPDFGDTLHNNIHEWFSKEENFCIWEELQMMMKIQKPVQPVAENNTQDNPFA
GKTIVVTGKVEPYTRDEMNSLIASLGAIAGSSVTRKTHYLVCGEKAGSKLSKARELGIPV
LEPQEFFRMAGVA
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaggaattgataaggaaacagcaggatctgactgcccggctcaaccgttatcgc
catgagtattacaatctcaatgcgcccagcatcagtgatgctgtctatgatcggctgttt
gaggaacttcaagacctggagcggcagacgggcatccagatggcgaactctcctaccagt
acggtggggtatccggcaatcagcaagctggagaaaaccaaccatccaatcccgctgctg
tcgctggataaggaaaaaaacattgtggaggtgtgccgtttcatgggcgagcatcaggtg
atgttcatgctcaaactggacgggctcaccatcaagttaacctatgagggtggcgaattg
ctggaagctgctacccgaggcgatggggaagtgggcgaaatcgtgacccacaatacccgc
gccattggcggtatacctgcgcatatccgatatgaagatcgtctggtgatcactggagag
gcattcattcgacccagcgattttgaacagctgaaggcctcgctggtggacaataacgga
gagacctacaaaaacggacgcaatctggcggctggctcggtacgcctgctggatgccaag
acctgtatggagcggcgtctgatgttcatgccgttcactgtgctggagggatttgaaaac
ctgccgcgcaagtcggagcggctgaaagagctctctgcgctgggatttaccccctgcaag
tatctggtgaccaagcgaacgctgacgcaggcagaggcggaggatggaatcaagcagctg
cagcagtatgccagagacaaggatattcctatcgacggcatcgttgtcacctacaatgat
gtggccttcgccaagagctgcgggcgtacaggccaccactataaggacggactggcgttc
aaatttgaggatgatctgtttgaaacaaagcttcagatgattgaatggacgcccggacgc
accggcgagattgccccggtcgcagtctttgcgccggtggaaatcgatggctgtgaggtg
tccagagcgagcctgcacaatctttcctttattgaagatctggagctgatgccgggaaac
cgcattttggtatcgaaaaggaatctcatcattcctcatgtggaagacaatctggaccgc
ggcggctttgtgctggaaagcgcataccctcaccggtgcccttgctgcggggaacccacc
cgtatccacgaaaccagagggcgcaatgagaacggcgaggaacgcacgatcaagacgctg
ttctgcgacaatgctggctgcgagacgagaaagctcaagcagtttgtccattttgtcggc
aaaaaggcgatgaatattgagggactgtccgaagcaacgctggaaaaattgattggccgg
ggctggattcacagctatctggacatctaccggttggatcagcataaagacgagctggtg
cgtatggacggctttggagaaagatcctggcagcgcctttggagtgctattcagcagagc
cggaatacgacctttgagcggtatgtaattgctatggacatccccatgatcggcaacacc
gccagcggcgttctttgccaggtattccacggtaatctggacgagttccgggatgccgtt
tatgccgggtacgacttccggcagctcccggactttggagatacgctgcacaataatatt
catgagtggttcagcaaagaagaaaatttctgtatttgggaggaattgcagatgatgatg
aagatccagaagccggtgcagccggttgcggaaaacaacacgcaggacaatccctttgcc
gggaaaaccattgtggtgaccggaaaggtggagccctacacccgcgatgagatgaacagc
ctgatcgcctcgctgggggcgattgctggcagctcggtgacccgtaagacccactatctg
gtctgcggcgagaaggccggcagcaaactgtccaaggcgcgggagctgggtatccctgtg
ctggaaccgcaggaatttttccgtatggcgggtgtggcctga
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