Clostridium asparagiforme: NQ535_18530
Help
Entry
NQ535_18530 CDS
T08571
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
casp
Clostridium asparagiforme
Pathway
casp03030
DNA replication
casp03410
Base excision repair
casp03420
Nucleotide excision repair
casp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
casp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NQ535_18530 (ligA)
03410 Base excision repair
NQ535_18530 (ligA)
03420 Nucleotide excision repair
NQ535_18530 (ligA)
03430 Mismatch repair
NQ535_18530 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
casp03032
]
NQ535_18530 (ligA)
03400 DNA repair and recombination proteins [BR:
casp03400
]
NQ535_18530 (ligA)
Enzymes [BR:
casp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NQ535_18530 (ligA)
DNA replication proteins [BR:
casp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NQ535_18530 (ligA)
DNA repair and recombination proteins [BR:
casp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NQ535_18530 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NQ535_18530 (ligA)
MMR (mismatch excision repair)
DNA ligase
NQ535_18530 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NQ535_18530 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
BRCT_2
PTCB-BRCT
HHH
Lar_restr_allev
Nlig-Ia
DUF7307
RUBY_RBDX
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
UWO74833
LinkDB
All DBs
Position
complement(4078133..4080097)
Genome browser
AA seq
654 aa
AA seq
DB search
MEDRIERMKELVSLLSKAGKAYYQESREIMSNFEYDRLYDELTALERETGVTLSGSPTKR
VGYEVLSELPKETHESPMLSLDKTKSVEDLQAWLGDQKGLLSWKMDGLTIVLTYDGGTLV
KAVTRGNGEIGEVITPNARVFANIPLNIAHKGLVVLRGEAVILYSDFRRINEEIEDVDAK
YKNPRNLCSGSVRQLNSQITAERNVHFEAFSLVRAEGVDFENSRKRQFEWLKSQGFEVVD
YREVTAETLPQAVQEFADAVEGYDIPSDGLVLLFDDIAYGESLGRTAKFPRNSIAFKWQD
EIRETKMRYIEWSPSRTGLINPVAVFEPVELEGTTVSRASVHNISILEGLELGEEDRITV
YKANMIIPQIADNLTRSGVKHIPEQCPVCGGATEIRQVNDVRSLYCINPDCQAKKIKSFT
LLVSRDALNIDGLSEATLEKFIGAGFIHEYADIFHLDRHQEAIVEMEGFGQKSYDNLVAS
VAKAADTALPRVIYGLGIAGIGLANAKALCRHFGYEFENMRKADEEELVAVDGIGAVLAK
AWMEYFSSEANNEAVDHLFAELTIEKEVVEETEQIFAGKTFVITGSLEHFGNRKELQELI
ESKGGKAAGSVSAKTSYLINNDSLSPSSKNKKAKDLGVPIITEEEFLRMLEPLE
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atggaagatagaatcgagagaatgaaggaacttgtctccctgctctccaaagcggggaag
gcctattatcaggagagccgggagattatgagcaactttgagtatgaccggctatacgac
gagctgaccgctctggagcgggagaccggcgtcaccctgtctggcagccccacgaaacgg
gtgggctacgaggtcctgagcgagctgccaaaggagacccacgagtcccccatgctgtct
ctggacaagaccaagagcgtggaggatttacaggcctggctgggggaccagaagggcctg
ctctcctggaaaatggacggccttaccatcgttctgacctacgacggcggaactctggtt
aaggcggtcacccggggaaacggcgagatcggcgaggtgatcacccccaacgccagggtg
ttcgccaacatccccttaaacatcgcccacaagggcctggtggtgctgcggggcgaggcg
gtgattctgtactctgatttccggcggatcaacgaggagatcgaggatgtggatgcaaaa
tacaaaaacccccgcaacctctgcagcggctcggtgcgccagctgaacagccagatcacg
gcggagcgcaacgttcattttgaggcgttctccctggtgcgggccgagggcgtggacttt
gagaactcccgcaagcgccagttcgagtggttaaagagccagggcttcgaggtggtggat
taccgggaggtgacggcggaaacgctgccccaggcggttcaggaattcgccgacgcggtg
gagggctacgacatcccctccgacggcctggtgctgctcttcgacgacatcgcttatggc
gagtccctgggccgtacagccaaattcccccggaattccatcgccttcaagtggcaggac
gagatccgggagaccaagatgcgctacatcgagtggagcccgtcccgcaccggcctgatc
aaccccgtggccgtgtttgagccggtggagctggagggcaccacggtaagccgggccagc
gtccacaacatcagcatcctggaagggctggagctgggcgaggaggaccggatcacggtc
tacaaggccaacatgatcattccccagattgcggacaacttgacacgcagcggggtgaag
catattccggagcaatgtcccgtctgcggcggggcaacggagatccgccaggtgaacgac
gtgcgcagcctctactgcattaacccggactgccaggccaagaagattaagagcttcacc
ctgttagtcagccgggacgccttaaatatcgacggcctcagcgaggccaccctggaaaaa
tttatcggggccggatttatccacgagtatgcggatattttccacctggaccgccatcag
gaggccatcgtggaaatggagggctttgggcagaagtcctacgacaatctggtggcatcg
gtggccaaagccgccgacaccgcgctgccccgggtgatctacggtctgggcatcgcgggc
atcggcctggcgaacgccaaggccctgtgccgccatttcggatatgagttcgagaacatg
cggaaggccgatgaggaagagctggtggccgtggacggcatcggagccgtcttagccaaa
gcgtggatggaatatttttcctccgaagcgaacaatgaggcggtggaccacctgttcgcc
gagctgaccattgagaaggaggttgtggaggagacggagcagatctttgcgggaaaaacc
tttgtgatcaccggttccctggagcatttcggcaaccggaaggaattgcaggagctgatc
gagtccaaaggcggcaaggccgcaggctccgtttccgccaagaccagttacctgatcaac
aacgattcgctgtccccatcttccaagaacaagaaggcgaaggatttaggcgttccgatt
atcacggaagaggagtttctccgaatgctggagcccctggaataa
DBGET
integrated database retrieval system
