Croceibacter atlanticus: CA2559_09423
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Entry
CA2559_09423 CDS
T01256
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cat
Croceibacter atlanticus
Pathway
cat03030
DNA replication
cat03410
Base excision repair
cat03420
Nucleotide excision repair
cat03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CA2559_09423
03410 Base excision repair
CA2559_09423
03420 Nucleotide excision repair
CA2559_09423
03430 Mismatch repair
CA2559_09423
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cat03032
]
CA2559_09423
03400 DNA repair and recombination proteins [BR:
cat03400
]
CA2559_09423
Enzymes [BR:
cat01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CA2559_09423
DNA replication proteins [BR:
cat03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CA2559_09423
DNA repair and recombination proteins [BR:
cat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CA2559_09423
NER (nucleotide excision repair)
GGR (global genome repair) factors
CA2559_09423
MMR (mismatch excision repair)
DNA ligase
CA2559_09423
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CA2559_09423
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
Auto_anti-p27
HHH
BRCT_2
Mig-14
5_3_exonuc
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
EAP86243
UniProt:
A3U8V7
LinkDB
All DBs
Position
2061599..2063593
Genome browser
AA seq
664 aa
AA seq
DB search
MTVKDQIQQLREELRQHNYNYYVLDKPEISDYDFDQKLKQLQDLETENPEFYDANSPTLR
VGGQVTKNFDTTTHDYRMYSLDNSYSKEDLEDWEKRIMKMVDGDVHYTCELKYDGASISL
TYEDGELIRAVTRGDGFKGDNVTNNVKTIRSIPLKLNGDYPKRFDIRGEIILPLEGFTKM
NAERVANGEEAYANPRNTASGSLKLQDSTEVSKRPLDCLLYSIIGKNLNFKTQFEGLEKA
REWGFKVPEVATLAKSTKEVMAFVNYWDTHRHDLPYETDGVVIKVNNLQQQEELGYTAKA
PRWAMAYKFKAEQVSTVLEKITYQVGRTGAITPVANLIPVQLAGTTVKRASLHNADQIEK
LDIREEDTVFVEKGGEIIPKIIGVDFTKRDKNSKPTQYIEHCPECETPLVRNEGEAQHYC
PNEERCPPQVVGRIQHYISRKALDIEGLGGETVALLANAGLIKNYADLYTLKIEDVLPLE
RMAQKSAENLINGIEASKQIPFERVLFGLGIRHVGETVAKTLVKTFKTIENLANAKEEEL
VEVEEIGGKIAESVVVFFSDEYKKETVQRLKEYGVQLEISAEQLQGQTNKLEGEIIVVSG
VFNKLSRTELKKAIEDNGGKVSSSISSKTTYLVAGENMGPSKRTKAEGLNVPIITEDEFL
DKIQ
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgacagttaaagatcagatacaacaacttagagaagagctaaggcaacataattacaat
tattatgtattagacaagccagaaatctcggactatgattttgatcaaaaattaaaacag
ttacaggatttagagacagaaaaccctgagttttatgatgcaaattcgccaacgttgaga
gttggtgggcaagtcactaaaaacttcgatacaactacccatgactatcgtatgtattct
ctagacaattcttattctaaagaagatttagaagattgggaaaaacgtattatgaagatg
gtagatggagatgtgcattatacttgtgagttaaaatatgatggcgcttcaataagttta
acttatgaggatggagagcttattagagctgtaacaagaggtgatggttttaagggagat
aatgtaaccaataatgttaagacaatacgttcaattcctttaaaattaaatggagactat
cctaaacgatttgatattaggggtgaaattatcttacctttagaagggtttacaaaaatg
aatgcagagcgcgtagccaacggtgaagaagcttatgctaacccaagaaatacagcttct
ggaagtttaaaattacaggatagtacagaagtttcaaaacgcccattagattgtttgcta
tactcaataattggcaaaaacttaaatttcaaaacccaatttgaaggtttagaaaaggca
agagaatggggctttaaagtaccagaagttgcaacactagcaaaaagcacgaaagaggtt
atggcgtttgttaattattgggacacccatcgtcacgatttaccatatgaaacagatggt
gttgtaataaaagtaaataatttacagcaacaagaagagttagggtatactgctaaggca
ccacgttgggcaatggcttataagtttaaagcagagcaggtttctacagtattagagaaa
attacgtatcaagttggccgcactggtgccattacacctgttgctaacttaatacctgtg
cagttagctggtacaactgttaagagagcctcgttgcacaatgcagatcaaatagaaaaa
ctggacataagagaagaagacactgtttttgtagaaaaaggtggagaaattattcctaaa
attataggtgtcgattttacaaaaagagataaaaactctaaacctacacaatatattgag
cattgtccagaatgtgaaacgccgttagtgagaaacgaaggcgaagcacaacattattgt
ccaaatgaagaacgttgtccaccacaagttgtagggagaattcaacattatatatcacgt
aaagctttagatatagaagggttgggaggagaaactgtcgcgttattagcaaatgcaggt
cttataaagaattatgcagatttatatacattaaaaattgaagatgtattgccattagaa
cgtatggctcaaaaaagtgcagaaaatttaattaatggaattgaagcttcaaaacaaatt
ccttttgaacgtgtattatttggtttaggcataagacacgttggtgagactgtagcaaaa
acacttgttaaaacgtttaaaacaattgaaaacttagcaaatgccaaagaggaagagctt
gttgaggtagaagaaataggaggtaagatagcagaaagtgttgtagtcttttttagtgat
gagtataaaaaagagaccgtacaacgtttaaaagagtatggtgttcaattagagatatct
gcagaacaattacaaggacaaacaaataagcttgaaggcgaaataatagttgtatctggt
gtatttaataaactaagtagaacagaacttaaaaaagctattgaagataatggcggtaaa
gtatccagttcaatatcttccaaaactacatacttggttgcaggagaaaatatgggtcct
agtaaacgcacaaaagcagaaggtttaaatgttccaattataacagaagatgagttttta
gataaaatacaatga
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