Cygnus atratus (black swan): 118244741 Help Entry 118244741         CDS       T09349                                  Symbol THBS1 Name (RefSeq) thrombospondin-1   KO K16857   thrombospondin 1 Organism cata  Cygnus atratus (black swan) Pathway cata04115   p53 signaling pathway cata04145   Phagosome cata04148   Efferocytosis cata04350   TGF-beta signaling pathway cata04510   Focal adhesion cata04512   ECM-receptor interaction cata04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:cata00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     118244741 (THBS1)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     118244741 (THBS1)  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     118244741 (THBS1)    04148 Efferocytosis     118244741 (THBS1)   09143 Cell growth and death    04115 p53 signaling pathway     118244741 (THBS1)   09144 Cellular community - eukaryotes    04510 Focal adhesion     118244741 (THBS1)   09142 Cell motility    04820 Cytoskeleton in muscle cells     118244741 (THBS1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:cata04131]     118244741 (THBS1)   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:cata00536]     118244741 (THBS1) Membrane trafficking [BR:cata04131]  Endocytosis   Phagocytosis    Opsonins     118244741 (THBS1) Glycosaminoglycan binding proteins [BR:cata00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    118244741 (THBS1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_CFP_C EGF_3 TSP1_ADAMTS cEGF Laminin_G_3 TSP1_CCN EGF Laminin_G_2 Motif Other DBs NCBI-GeneID:  118244741 NCBI-ProteinID:  XP_035395781 LinkDB All DBs Position 5:26964742..26980540 Genome browser AA seq 1177 aa AA seqDB search MGPAALLVLVLLLSGGSEARRTAESRGDDNSVFDLFELIGFIRKGAGRRAPGVHLVKGPE SSSPAYRIEDASRIPAVPDSKFQDLLDAIHAEKGFILLATLRQAKKSRGTLLAVEQKDGS GHVFSLVSNGKAGTLDLSLSGDGKQQLVSVEDALLATGHWKNITLFVQEDRAQLYVGCEK MENAELDIPIQNIFTRDLASSATLRIAKGGVNDNFQGLLQNVRFVFGTTLETILRNKGCS SSTSAIITLDNPMNGSSPAIRTNYIGHKTKDIQAVCGFSCDELTNMFVELQGLRSMVTTL QDRVRKVTEENELIAKVVQITPGVCIHNGILHKNKEEWTIDSCTECTCQNSATICRKVSC PLMPCSNATVPDGECCPRCWPSDYADDGWSPWSEWTSCSVTCGNGIQQRGRSCDSLNNRC EGSSVQTRTCHLQECDKRFKQDGGWSHWSPWSSCSVTCGTGMITRIRLCNSPVPQLNGKP CEGEARETKSCQKDPCPINGNWGPWSPWDACTVTCGGGLQKRSRLCNNPEPQYGGKTCVG EARGTQVCNKQDCPIDGCLSNPCFAGTTCTSSPDGSWKCGACPAGYHGDGIHCQDIDECK EVPDACFVFNGVHRCENTEPGYNCLPCPPRFTGTQPFGRNVEDAMANKQVCKPRNPCTDG THDCNKNAKCNYLGHFSDPMYRCECKPGYAGNGIICGEDTDLDGWPNENLVCVANATYHC KKDNCPNLPNSGQEDYDKDGIGDACDDDDDDDGIPDDRDNCPFIYNPQQYDYDRDDVGDR CDNCPYNHNPDQIDTDNNGEGDACAVDIDGDGVLNERDNCQYVYNVDQRDTDLDGVGDQC DNCPLEHNPDQEDTDSDRIGDECDNNQDIDEDGHQNNLDNCPYVPNANQADHDKDGKGDA CDHDDDNDGIPDDKDNCRLVANPDQADSDGDGRGDACKDDFDQDSVPDIDDICPENVDIS ETDFRRFQMIPLDPKGTSQNDPNWVVRHQGKELVQTVNCDPGLAVGFDEFNAVDFSGTFF INTERDDDYAGFVFGYQSSSRFYVVMWKQITQSYWDSTPTKAQGYSGLSIKVVNSTTGPG EHLRNALWHTGNTPGQVRTLWHDPRHIGWKDFTAYRWRLSHRPKTGYIRVVMYEGKKIMA DSGPIYDKTYAGGRLGLFVFSQEMVFFSDLKYECRDP NT seq 3534 nt NT seq  +upstreamnt  +downstreamnt atggggccggcggcgctcctcgtcctcgtcctccttctgagcggcggctcggaggcccgg cgcacggcagagtccaggggcgatgataacagcgtcttcgatctctttgaactcatcggc tttattcgcaagggagctgggcgccgggcacccggggtgcacctggtgaaggggccagag tcctccagccccgcttaccgtatcgaagatgccagtcgcatccctgctgtccctgactcc aagttccaagacttgttagatgccatccatgccgagaaaggcttcatccttctggccacc ctccggcaagccaagaaaagcagaggcacgctgttggctgtggaacagaaggatggctct ggtcatgtcttcagtctagtttcaaacggcaaggcaggcaccctggacttgagcctctcc ggtgatggcaagcagcagttggtgtctgtagaggatgccttgctggctacgggacattgg aagaacatcaccctgtttgtgcaggaagaccgggctcagctttatgtggggtgtgagaaa atggaaaatgctgaactggacattcccatccaaaacatcttcacgagagacctggccagc agtgccacgctccgtatcgccaaagggggagtcaatgacaacttccagggactgctgcag aatgtgcggtttgtgtttggaacaactctggaaactatcctgaggaacaaaggctgctcc agctccactagtgcaatcattactttggacaaccccatgaatggttccagcccagctatc cgcactaattacattggccataaaacaaaggacatccaagctgtctgtggcttttcctgc gatgaactaaccaatatgtttgtggaattgcaagggttacggtccatggttacaacactt caagacagagttcgcaaagtgactgaagaaaatgagctgattgccaaagtggtccagatt actcctggagtatgcattcataatgggatcttgcacaaaaataaggaagagtggactatt gacagctgtactgaatgtacttgccagaactctgccactatatgccgcaaagtgtcttgc cctctcatgccttgttccaatgccactgtgcctgatggggaatgctgcccccgatgctgg cctagcgactatgcagatgatggatggtctccttggtctgaatggacttcatgttcggtg acctgtgggaatgggattcagcagagagggcgttcctgtgacagtctcaataaccgctgt gaagggtcttctgtacagactcggacttgccaccttcaggagtgtgataagagatttaaa caggatggtggctggagccactggtcaccatggtcatcatgttctgtcacttgtggcacg ggcatgatcactagaattcgtctctgcaactctccagtaccacagctgaatggcaagcct tgtgagggcgaggcaagagaaaccaagtcctgccagaaagatccttgcccaattaatggc aactggggaccatggtctccatgggatgcttgcacagtgacatgtggaggaggacttcaa aaacgcagccgtctctgcaataatcctgagcctcagtacggtgggaagacctgcgtaggt gaagctagaggaactcaggtctgcaacaaacaggactgtccaattgatgggtgtctgtct aatccctgctttgctggaactacatgtaccagctcacctgatggttcctggaagtgtggt gcctgtcctgctggctaccatggtgatggtatccactgccaagatattgatgagtgcaaa gaggttcctgatgcctgctttgtcttcaatggagtgcacaggtgtgagaatactgaacct gggtacaactgtctaccttgtccaccacgtttcactgggacacagccatttggtcgcaat gttgaggatgcaatggctaacaaacaggtctgcaaaccaaggaatccatgcacagatgga acacatgattgcaacaaaaatgccaaatgtaactaccttggccacttcagtgacccaatg tatcgctgtgaatgtaaacctggctatgctggcaatggcataatctgtggagaagacact gacttggatggatggccaaatgagaatcttgtctgtgttgctaatgccacttaccactgt aaaaaagataactgccctaatctccccaactctgggcaggaagactatgataaagatggg attggtgatgcttgtgacgatgatgatgatgacgatggtattcctgatgaccgggacaac tgtccattcatctacaacccacagcagtatgactatgacagggatgatgttggtgaccgt tgtgataactgcccctacaatcacaaccctgatcagattgacactgacaacaacggagag ggagatgcatgtgcagtggatattgatggagatggggtcctcaatgaaagggacaattgc caatatgtctacaatgtagaccagagggatacagacttggatggtgttggagatcagtgt gataactgtccactggaacataatcctgaccaggaagacactgattctgaccgcataggt gatgagtgtgacaacaaccaggacatagatgaagatggccatcaaaataatcttgataac tgtccctatgtgcccaatgccaatcaagctgatcatgacaaggatggaaaaggtgatgcc tgtgaccatgatgatgacaacgatggtattcctgatgacaaagataactgcagactggtt gccaacccagatcaagctgattctgatggtgatggacgtggagatgcttgcaaagatgac tttgaccaagacagtgtgccagacattgatgacatctgccctgaaaacgtggacatcagt gagactgatttccgaaggtttcagatgattcccctggatcccaaaggaacatcccaaaat gatccaaactgggttgtgcgtcaccagggtaaagagctggttcaaacagtcaactgtgac cctggtcttgcagttggttttgatgaattcaatgctgtggacttcagtggtaccttcttc atcaacacagaaagggatgatgattatgctggctttgtatttggctaccaatctagcagt cgtttctacgttgtcatgtggaagcagatcacccagtcttactgggactccacaccaacc aaagctcagggctactcaggtctctccatcaaagttgtgaattccaccacaggtccagga gaacaccttcgtaatgctctgtggcatacaggaaacactcctggccaggtgagaactctg tggcatgaccctcgtcacataggctggaaagacttcactgcatacaggtggcgccttagc catagaccaaagactggctatatcagagttgtaatgtatgaagggaagaaaatcatggca gactcaggaccaatctatgacaaaacttacgctggtggtcggctaggattatttgtcttc tctcaagaaatggtgttcttctcagatcttaaatatgaatgcagagatccataa

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