Cygnus atratus (black swan): 118245099
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Entry
118245099 CDS
T09349
Symbol
SLIT1
Name
(RefSeq) LOW QUALITY PROTEIN: slit homolog 1 protein
KO
K06838
slit 1
Organism
cata
Cygnus atratus (black swan)
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cata00536
]
118245099 (SLIT1)
Glycosaminoglycan binding proteins [BR:
cata00536
]
Heparan sulfate / Heparin
Axon guidance molecules
118245099 (SLIT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
EGF
LRR_5
Laminin_G_2
hEGF
LRRCT
LRRNT
EGF_TEN
Laminin_G_1
LRR_1
LRR_9
LRR_14
EGF_Teneurin
EGF_4
EGF_CA
EGF_2
LRRCT_2
LRR_NXF1-5
Motif
Other DBs
NCBI-GeneID:
118245099
NCBI-ProteinID:
XP_035396594
LinkDB
All DBs
Position
7:complement(14823304..14856480)
Genome browser
AA seq
1444 aa
AA seq
DB search
MENQISMVERGAFDDMKELERLRLNRNQLHALPELLFQHNQALSRLDLSENFIQAIPRKA
FRGATDLKNLQLDKNQISCIEDGAFRALRGLEVLTLNNNNITSIPVSSFNHMPKLRTFRL
HSNHLFCDCHLAWLSQWLRQRPTIGLFTQCAAPAQLRGLNVAEIQKNEFSCAGQTEAARA
QLCSLSSGSCPAMCTCSNGIVDCRGKGLTAIPANLPETMTEIRLELNGIKSIPPGAFSPY
KKLRRIDLSNNQISEIAPDAFQGLRSLNSLVLYGNKITDLPKGVFGGLFALQLLLLNANK
INCVRADAFQDLQNLSLLSLYDNKIQSLAKGTFTSLRAIQTLHLAQNPFVCDCNLKWLAD
FLRANPIETSGARCASPRRLANKRIGQIKSKKFRCSAKEQYFIPGTEDYQLNSECNSDVV
CPPKCRCESGVVECSNLKLTKIPERIPQSTAELRLNNNEISVLEATGIFKKLPHLKKINL
SNNKVSEIEDGAFEGAASVSELHLTVNQLESVRSGMFRGLDGLRTLMLRNNRISCIHNDS
FTGLRNVRLLSLYDNQISTIAPGAFDTLQSLSTLNLLANPFNCNCQLAWLGDWLRKRKIV
TGNPRCQNPDFLRQIPLQDVAFPDFRCEEGQEETSCIPRPQCPQECTCLDTVVRCSNKHL
KALPRGIPKNVTELYLDGNQFTQVPGQLSTFKYLQLVDLSNNRISSLSNSSFTNMSQLTT
LILSYNSLQCIPPLAFEGLRSLRLLSLHGNDISSLPEGIFADVTSLSHLAIGANPLYCSC
NLRWLSSWVKTGYKEPGIARCAGPPDMEGKLLLTTPAKKFECQGPPALSIQAKCNPCLSS
PCQNQGTCHNDPLGSYRCACPAGYKGKDCEVPLDGCSSKPCANGGTCQPQEGEGGGFRCL
CAVGFEGPSCHTVSDPCKEHSCENGGSCVPGATNYTCLCPARYTGDFCEQPPDFCSAELS
PCQHGSTCISTSQGPRCECVPGYVGSNCSEDFDDCQDHRCQNNARCVDEVNGYSCLCTEG
YSGQLCEMPPRAAGQPGPCERAECQNGAACVERGTRALCQCLPGFGGPKCEKLLSVNFVD
RDTYLQFTDLQDWPRANITLQVSTAEGNGILLYNGDSDHMAVELYQGHVRVSYDPGTHPS
SAIYSAETINDGQFHTVELVTFDQMVNLSIDGGSPMTMQLGQALHPKQRGPALRGRDARG
RQLGAFRLWQLLNGTSFHGCIRNLYINNELQDFTKTRMTPGXGAGLRALPQALLLHGICQ
PAGTHGPVCHCEPGWDGPHCDQPRGGPCQGHKCVHGLCLPLDALSYSCQCHQGYQGALCN
QPAAPPDPCRLLPCRHGRCRLTPGGQPTCECHSGYTGALCDQELECRGEPVRDYHQVQRG
YAICQTTRPVAWVQCRGACGGDTGASCCTGLRPRRRKYAFECSNGATFVEEVEKPSKCGC
SQCL
NT seq
4335 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaccagatcagcatggtggagcgcggggcgttcgatgacatgaaggagctggag
cggctacggctgaaccgcaaccagctgcacgccctgcccgagctcctcttccagcacaac
caggctctgtcacggctggacctgagcgagaacttcatccaggccatccccaggaaagct
ttccgcggggccaccgacctcaagaacctgcaactggacaagaaccagatcagctgcatc
gaggacggtgctttccgtgccctgcggggcctggaggtcctgaccctgaacaacaacaac
atcacttccatccccgtgtccagcttcaatcacatgcccaagctgcggaccttccgcctg
cactccaaccacctcttctgcgactgccacctggcctggctgtcgcagtggctccgccag
cgccccaccatcgggctcttcacccagtgcgcggctccggcccagctccgcggcctcaac
gtggccgagatccagaagaatgagttcagctgcgctggacaaacggaggcggcacgtgcc
cagctctgcagcttgtcctccggctcctgcccggccatgtgcacttgcagcaacggcatc
gtggactgtcggggcaaggggctgacggccatccccgccaacctgcccgagaccatgacg
gagatacgcctggagctcaacggcatcaagtccatcccccctggcgccttctccccctac
aagaagctgcggaggatagacctgagcaacaaccagatctcggagatcgcccccgacgcc
ttccaggggctgcgctcgctgaactcgctggtgctgtacggcaacaagatcacggacctc
cccaagggcgtcttcgggggactttttgccctgcagttgctgctcctcaacgccaacaag
atcaactgcgtgcgggcggacgccttccaggacctgcagaacctctcgctgctctcgctc
tacgacaacaagatccagagcctggccaagggcaccttcacctccctgcgggccatccag
accctgcacctggcccagaaccccttcgtctgcgactgcaacctgaagtggctggcggat
ttcctccgcgccaaccccatcgagaccagcggcgcccgctgcgccagcccccggcgcctg
gccaacaagcgcatcgggcagatcaagagcaagaagtttcgctgctcggccaaggagcag
tatttcatcccagggacggaggactaccagctcaacagcgagtgcaacagcgacgtggtc
tgccccccaaagtgccgctgcgagtccggcgtggtcgagtgctccaacctgaagctcacc
aagatcccggagcgcatcccgcagtccacggccgagctgcgcttgaacaacaatgaaatc
tccgtcctggaggccaccggcatcttcaagaagcttcctcatctgaagaaaatcaacctc
agcaacaacaaggtgtcggagatcgaggacggggcgttcgagggggccgcgtccgtcagc
gagctgcacctcaccgtcaaccagctggagtcggtgcgcagcggcatgttcaggggcctg
gacgggctgaggaccctgatgctgaggaacaaccgcatcagctgcatccacaacgacagc
ttcacggggctgcgcaacgtgcgcctgctctcgctgtacgacaaccagatcagcaccatc
gcgccgggcgccttcgacacgctgcagtccctctccacgctgaacctgctcgccaacccc
ttcaactgcaactgccagctggcctggctgggggactggctgcgcaagaggaagatcgtg
acggggaacccgcggtgccaaaaccccgacttcctccggcagatcccgctgcaggacgtg
gccttccccgacttcaggtgtgaggaaggtcaggaggagacgagctgcatcccgcggccc
cagtgccctcaggagtgcacctgcctcgacaccgtggtccgctgcagcaacaagcacctc
aaggccctgcccaggggcatccccaagaacgtcacggagctctacctggatgggaaccag
ttcacccaggtgccggggcagctctccaccttcaagtacctgcagcttgtcgacctgagc
aacaataggatcagctccctgagcaactcctccttcaccaacatgagccagctcaccacc
ctgatcctgagctacaactccctgcagtgcatcccgccgctggccttcgagggcctgcgc
tccctgcgactgctgtctctccacggcaatgacatctccagcctccccgagggcatcttc
gcagatgtcacctccctgtcccacctagccatcggggccaaccccctgtactgcagctgc
aacctgcgctggctctccagctgggtcaagaccgggtacaaggagccgggcatcgcccgc
tgcgccgggccccccgacatggaagggaagctgctgctcaccacccctgccaagaagttt
gagtgccaggggcccccagccctgagcatccaggccaagtgcaacccctgcctctccagc
ccctgccagaaccaaggcacctgccacaatgacccgctcggatcctaccgctgcgcctgc
cccgccggctacaagggcaaggactgcgaggtgcctctcgacggctgctcctccaaaccc
tgtgccaacggcggcacctgccagccccaggagggggaaggaggcgggttcaggtgcctg
tgtgcagtgggttttgagggcccgagctgccacaccgtcagtgacccctgcaaggagcat
agctgtgagaacgggggctcctgcgtgcccggggccaccaactacacctgcctgtgccct
gcccgctacacaggggatttctgcgagcagccgccggatttctgctcggctgagctcagc
ccctgccagcacggctccacgtgcatctccaccagccaggggcccaggtgcgagtgtgtg
cccggctatgtggggagcaactgcagcgaggactttgacgactgccaggaccaccggtgc
cagaacaatgctcgctgcgtggacgaggtgaacggctactcctgcctctgcaccgagggc
tacagcgggcagctgtgcgagatgccgccccgtgccgccggccagcccggcccctgcgag
cgagccgagtgccagaacggggccgcctgcgtggagcggggcacccgcgccctctgccag
tgcctgcccggcttcggcggccccaagtgcgagaagctgctgagcgtcaacttcgtggac
cgcgacacgtacctgcagttcaccgacctgcaggactggccccgggccaacatcaccctg
caggtctccacggctgagggcaatggcatcctgctgtacaacggcgacagcgaccacatg
gccgtggagctgtaccagggccacgtcagggtcagctacgaccctggcacccaccccagc
tcggccatatacagcgccgagaccatcaacgacgggcagttccacaccgtggagctggtg
accttcgaccagatggtgaacctctccatcgacggcggcagccccatgaccatgcaactc
gggcaagcactacaccctaaacagcgaggccccgctctacgtgggagggatgcccgtgga
cgtcaactcggcgccttccgcctctggcagctcctcaacggcaccagcttccacgggtgc
atccgcaacctttacatcaacaacgagctgcaggacttcaccaagacgcggatgacgccc
ggcngtggtgccgggctgcgagccctgccgcaagctctactgctgcacggcatctgccag
cccgccggcacgcacggccccgtctgccactgcgagcccggctgggacgggccccactgc
gaccagccccgcggcggcccctgccaggggcacaagtgtgtgcacgggctgtgcctgccc
ctcgacgccctctcctacagctgccagtgccaccagggctaccagggcgccctgtgcaac
cagccggccgcgccgcccgacccctgccgcctcctgccctgccgccacggccgctgccgc
ctcaccccgggtggccaacccacctgcgagtgccacagtggatacactggggccctgtgc
gaccaagagctcgagtgccggggggagccggtgcgggactaccaccaggtgcagcggggc
tacgccatctgccagaccacgcggccggtggcctgggtgcagtgccggggtgcctgcggc
ggtgacaccggtgccagctgctgcaccgggctgcggccgcggcgccgaaaatacgccttc
gagtgcagcaacggcgcgaccttcgtggaggaggtggagaagcccagcaagtgtggctgc
agccagtgcctgtga
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