Cygnus atratus (black swan): 118248038
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Entry
118248038 CDS
T09349
Symbol
LSM3
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm3
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
cata
Cygnus atratus (black swan)
Pathway
cata03018
RNA degradation
cata03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118248038 (LSM3)
09123 Folding, sorting and degradation
03018 RNA degradation
118248038 (LSM3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cata03019
]
118248038 (LSM3)
03041 Spliceosome [BR:
cata03041
]
118248038 (LSM3)
Messenger RNA biogenesis [BR:
cata03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118248038 (LSM3)
mRNA degradation factors
5'-3' decay
Lsm complex
118248038 (LSM3)
Spliceosome [BR:
cata03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
118248038 (LSM3)
Complex C
U2 snRNP components
118248038 (LSM3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
TIG_SUH
vATP-synt_E
DUF150_C
Motif
Other DBs
NCBI-GeneID:
118248038
NCBI-ProteinID:
XP_035402490
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All DBs
Position
10:complement(10539195..10542066)
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AA seq
102 aa
AA seq
DB search
MADEVDQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET
VTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG
NT seq
309 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgaggtggatcagcaacaaacaacaaatactgtagaggagccacttgatctc
attagactcagtctagatgagcgaatctatgttaaaatgaggaatgacagagaacttaga
ggcagactacacgcgtatgatcagcacttaaatatgattctgggtgatgtagaagaaact
gtaacaacaatagagattgatgaagaaacctatgaagaaatttataaatctacgaaaagg
aatattccgatgctctttgtcagaggtgacggcgttgtgcttgtagctcccccgttgagg
gttggctga
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