Cygnus atratus (black swan): 118250054
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Entry
118250054 CDS
T09349
Symbol
CACNA1C
Name
(RefSeq) voltage-dependent L-type calcium channel subunit alpha-1C isoform X1
KO
K04850
voltage-dependent calcium channel L type alpha-1C
Organism
cata
Cygnus atratus (black swan)
Pathway
cata04010
MAPK signaling pathway
cata04020
Calcium signaling pathway
cata04260
Cardiac muscle contraction
cata04261
Adrenergic signaling in cardiomyocytes
cata04270
Vascular smooth muscle contraction
cata04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
118250054 (CACNA1C)
04020 Calcium signaling pathway
118250054 (CACNA1C)
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
118250054 (CACNA1C)
09153 Circulatory system
04260 Cardiac muscle contraction
118250054 (CACNA1C)
04261 Adrenergic signaling in cardiomyocytes
118250054 (CACNA1C)
04270 Vascular smooth muscle contraction
118250054 (CACNA1C)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cata04040
]
118250054 (CACNA1C)
Ion channels [BR:
cata04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
118250054 (CACNA1C)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ca_chan_IQ
GPHH
CAC1F_C
PKD_channel
DUF4834
Motif
Other DBs
NCBI-GeneID:
118250054
NCBI-ProteinID:
XP_035406576
LinkDB
All DBs
Position
1:65487673..65966652
Genome browser
AA seq
2220 aa
AA seq
DB search
MFQAFVRQAYQPLSSHQQGEPETKYKGKLVHETQLNCFYIKPGGSNYGSPRPAHANMNAN
AAAGLAPEHIPTPGAALSWQAAIDAARQAKLMGSAGNATISTASSTQRKRQQYGKQKKQG
TTTATRPPRALLCLTLKNPIRRACISIVEWKSFEIIILLTIFANCVALAIYIPFPEDDSN
ATNSNLERVEYLFLIIFTVEAFLKVIAYGLLFHPNAYLRNGWNLLDFIIVVVGLFSAILE
QATKADGGNSIGGKGAGFDVKALRAFRVLRPLRLVSGVPSLQVVLNSIIKAMVPLLHIAL
LVLFVIIIYAIIGLELFMGKMHKTCYHVQGGLIDTPAEDDPSPCAPQSAHGRQCQNGTEC
KAGWEGPKHGITNFDNFAFAMLTVFQCITMEGWTDVLYWVNDAIGRDWPWIYFVTLIIIG
SFFVLNLVLGVLSGEFSKEREKAKARGDFQKLREKQQLEEDLKGYLDWITQAEDIDPENE
DEGMDEEKPRNMSMPTSETESVNTDNVPGADIEGENCGARLAHRISKSKFSRYWRRWNRF
CRRKCRAAVKSNVFYWLVIFLVFLNTLTIASEHYNQPDWLTEVQDTANKVLLALFTAEML
LKMYSLGLQAYFVSLFNRFDCFIVCGGILETILVETKIMSPLGISVLRCVRLLRIFKITR
YWNSLSNLVASLLNSVRSIASLLLLLFLFIIIFSLLGMQLFGGKFNFDEMQTRRSTFDNF
PQSLLTVFQILTGEDWNSVMYDGIMAYGGPSFPGMLVCIYFIILFICGNYILLNVFLAIA
VDNLADAESLTSAQKEEEEEKERKKLARTASPEKKQEIEKTAVEEETKEEKIELKSITAD
GESPPATKINMDDYQPNENEEKSPYPTTEAPAEEDEEEPEMPVGPRPRPMSELHLKEKAV
PMPDASAFFIFSPNNRFRVHCHRIVNDNIFTNLILFFILLSSISLAAEDPVRHLSFRNQI
LFYFDIVFTVIFTIEIALKILGNADYVFTSIFTLEIILKMTAYGAFLHKGSFCRNYFNIL
DLLVVSVSLISFGIQSSAINVVKILRVLRVLRPLRAINRAKGLKHVVQCVFVAIRTIGNI
VIVTTLLQFMFACIGVQLFKGKLYSCTDSSKQTAAECRGYYITYKDGEVNQPMIQPRSWE
NSKFDFDNVLTAMMALFTVSTFEGWPELLYRSIDSHMEDVGPIYNHRVEISIFFIIYIII
IAFFMMNIFVGFVIVTFQEQGEQEYKNCELDKNQRQCVEYALKARPLRRYIPKNQYQYKV
WYVVNSTYFEYLMFVLILLNTICLAMQHYGQSCMFKEAMNILNMLFTGLFTVEMVLKLIA
FKPKGYFSDPWNVFDFLIVIGSIIDVILSETNHYFCDAWNTFDALIVVGSIVDIAITEVN
PAEHTQCSSSMNAEENSRISITFFRLFRVMRLVKLLSRGEGIRTLLWTFIKSFQALPYVA
LLIVMLFFIYAVIGMQVFGKIALNDTTEINRNNNFQTFPQAVLLLFRCATGEAWQEIMLA
CLPDKKCDPESEPANSTEADHSCGSSFAVFYFISFYMLCAFLIINLFVAVIMDNFDYLTR
DWSILGPHHLDEFKRIWAEYDPEAKGRIKHLDVVTLLRRIQPPLGFGKLCPHRVACKRLV
SMNMPLNSDGTVMFNATLFALVRTALRIKTEGNLEQANEELRAIIKKIWKRTSMKLLDQV
VPPAGDDEVTVGKFYATFLIQEYFRKFKKRKEQGLVGKPSQRNALSLQAGLRTLHDIGPE
IRRAISGDLTAEEELDKAMKEAVSAASEDDIFRRAGGLFGNHVSYYQSDGRSAFPQTFTT
QRPLHINKSGNNQGDTESPSHEKLVDSTFTPSSYSSSGSNANINNANNTALCRFPSPPSY
PSTVSTVEGHGAPLSPTIRVQEAPWKLPSKRTHYYETLGRSSSRDSQLAIVCQEEVSQDE
TYDENLNEDIEYCSEPSLLSTEMLSYQDDENRQLTPPENNKGEDTRHSPKKGFLRSSALG
RRASFHLECLKRQKNQGVDVSQKTVLPLHLVHHQALAVAGLSPLLQRSHSPTMFSRLCAT
PPATPCSRGWPQQAIPTLRLEGAESSEKLNSSFPSVHCSSGFPDGTGCSSPRRARPVSLT
VPSQSAGSSRQFHGSAGSLVEAVLISEGLMQFAQDPKFIEVTTQELADACDMTIEEMENA
ADNILNGNSKQSPNGNLLPFVNCRDAGQDSAGEEEEEVQSPDCRKSQEELKDSRIYISSL
NT seq
6663 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagcctttgttcggcaagcatatcaaccactatccagccaccagcaaggggaa
cctgaaacgaagtataaggggaagctggtgcatgaaactcagcttaactgtttctacatc
aaacctggaggttccaactatgggagtccccgtccagctcatgccaacatgaatgccaat
gcagctgcagggcttgccccagagcatatccctactccaggggcagctctgtcctggcaa
gctgcaattgatgctgccaggcaagccaaattgatgggtagtgctggcaatgcaacaata
tccacagctagctccacgcagagaaaacggcagcagtacgggaaacagaaaaaacagggt
actaccacagctacacgtcctccccgggcactgctgtgtttaacactgaaaaatcccatc
cggagggcatgcatcagcatcgtcgaatggaaatcatttgaaataattattttactgact
atttttgccaattgtgtggccttagctatctatatcccctttccagaagatgattccaat
gccaccaattccaatctggaacgagtggaatatctctttctcataatttttacagtggaa
gcatttttaaaagtaatagcatatggacttctctttcaccccaacgcttacctccgcaat
ggctggaatttactagattttataatcgtggtcgtagggctttttagtgcaattttagaa
caagcaaccaaagcagatggggggaattcaataggaggaaaaggtgccggatttgatgtt
aaagcactgcgggctttccgagtattgcgtccgttacggctggtgtctggagttcctagt
cttcaggtggttttaaactccattatcaaggccatggtccctttgttgcatattgccctg
ctggtgctgtttgtcattatcatctatgccatcattggactggagttattcatgggaaag
atgcataagacctgctaccacgtgcaaggggggctgatagatacacctgcagaagatgat
ccgtctccctgtgccccccagtctgcacatgggcggcagtgtcagaatggcaccgaatgc
aaagcaggctgggagggacccaagcacggcattacgaactttgacaattttgcttttgcc
atgctgacggtgtttcagtgcatcacgatggagggctggacagatgtactctactgggtc
aatgatgccataggaagggactggccctggatctattttgttacactaatcatcataggg
tcattttttgtacttaacttggttctcggtgtacttagcggggagttttccaaagaaaga
gagaaggctaaggctcgtggtgatttccagaagttacgggaaaaacaacagctggaggag
gatttgaagggatatttagactggataactcaagctgaagacattgacccagaaaatgaa
gatgaaggcatggatgaggagaagcctcgaaacatgagcatgcccaccagtgagaccgag
tccgtgaacacagacaacgtccctggagcagatattgaaggcgaaaactgcggtgctagg
ctagcgcatcggatctccaaatctaagtttagtcgctactggcgccggtggaatcgattc
tgcagaagaaagtgccgtgccgctgtcaagtccaatgttttctactggttggtgatcttc
ctcgtgtttcttaacacccttactattgcctctgaacactacaaccagcctgactggctc
actgaggttcaagacactgccaataaggtgctgctagctcttttcacggcagagatgttg
ctgaagatgtacagccttggtctgcaggcctattttgtgtccctcttcaaccgctttgac
tgtttcatcgtgtgtggaggaatcctggaaacgattctggttgagacaaagatcatgtca
ccactgggcatttcagtgttgagatgtgttcggctattaagaatatttaaaatcacaaga
tattggaactccctgagcaaccttgtggcttcactcctgaattcagttcgctccattgct
tccctgttgctgctcctcttcctcttcattatcatcttctcactcctggggatgcagctc
tttgggggcaagtttaactttgacgaaatgcagaccaggaggagtacatttgacaacttc
ccccaatccctcctcactgtgtttcagatcctgactggggaggactggaattcggtgatg
tatgatgggatcatggcttatggcggcccctcttttccaggaatgttggtctgtatttac
ttcatcatcctcttcatctgtggaaactatatcctgctgaatgtatttttggctattgct
gtggacaaccttgctgatgctgagagtttaacatctgcacagaaagaggaggaagaggaa
aaagaaaggaaaaagttagctaggactgctagtcctgaaaagaaacaggagattgaaaaa
acagctgtggaggaggagacaaaggaggagaaaattgagctgaaatcaatcactgctgat
ggagaatccccgcctgctaccaagatcaatatggatgattatcaacccaatgaaaacgaa
gaaaagagcccatatcccacaacagaagcaccagcagaggaagatgaggaagaacctgag
atgcctgttggccctcgacctcgcccaatgtctgaactgcacctcaaggaaaaggctgtg
cccatgcctgatgccagcgcttttttcatcttcagtcctaacaacaggtttcgtgtccac
tgccatcgaatcgttaatgataacattttcaccaacctgatcctatttttcatcttgctc
agcagcatctccctggcggctgaggaccccgtccgacacctctcctttaggaaccaaatt
ctcttttattttgatatagtttttactgtcattttcaccattgaaattgctctgaagatc
ctaggcaatgcagactatgtcttcactagtatctttacattagaaattattcttaagatg
accgcatatggagctttcctccataagggctccttctgcagaaactatttcaacatctta
gacctgctggtggtcagcgtttctctcatctcctttgggatccagtccagtgccatcaat
gtggtgaagatcctgcgtgttctgcgagtacttagaccactgagggccatcaacagagcc
aaagggctaaagcatgtggtccagtgtgtgtttgtcgccatccgaaccatcggaaacatt
gtgattgtcacaactttgctgcagttcatgtttgcctgcattggagttcagttgttcaag
ggcaaactctatagctgcactgatagctccaagcagacagcagcagaatgcagagggtac
tacattacatacaaggatggtgaggtcaaccagccaatgatccagccccggagctgggag
aacagcaagtttgactttgacaacgtcttgactgccatgatggccctcttcactgtctcg
acctttgagggctggccagagttgctgtataggtccattgattcccacatggaggatgtg
ggacccatctataatcacagggttgagatctccatcttctttattatctacatcatcatc
attgctttcttcatgatgaacatcttcgttggtttcgtcatcgtcacatttcaggaacaa
ggagaacaagaatacaagaactgtgagctggacaagaaccagcgccagtgtgtagaatac
gccctgaaggcccggcccctgcggagatacatccctaaaaaccagtatcagtacaaagtt
tggtatgtggtcaactccacctattttgaatacctgatgttcgttttgatcctgctgaac
accatctgcctggccatgcaacactatggtcagagctgcatgttcaaggaagccatgaac
atcctcaacatgcttttcactggcctcttcactgtcgagatggtcctgaaattaatcgcc
ttcaaacctaagggttactttagtgatccttggaatgtttttgacttcctcatcgtaatt
ggcagcattatagacgtcattctcagtgaaactaatcactatttctgtgatgcatggaat
acatttgacgccttgattgttgtgggtagcattgttgatatagcaatcaccgaggtgaac
ccagctgaacatacccaatgctcttcctctatgaacgcagaggaaaactctcgcatctca
atcaccttcttccgactcttccgcgtgatgcgtcttgtgaagctcctgagccgaggggag
ggcatccggacgctgctttggaccttcatcaagtccttccaggctctcccctatgtggct
cttttaatagtgatgctattcttcatctacgctgtgatagggatgcaggtgtttggtaaa
attgcactgaacgataccacagaaatcaaccgcaacaacaacttccagaccttcccccaa
gcagtgctgctgcttttcaggtgtgccactggcgaggcctggcaggaaatcatgctggca
tgtctcccagacaagaagtgcgacccggagtcggagccagccaactccaccgaagccgac
cactcctgcggcagcagcttcgccgtcttctacttcatcagcttctacatgctctgtgcc
ttcctgatcatcaatctttttgtagctgttataatggataactttgattacctgacgcgg
gactggtccattttaggaccacaccacctggatgagtttaaaaggatctgggcagagtat
gaccctgaagccaaggggcggatcaagcacttggacgtggtgacactgctccggcgcatt
cagccccccctgggctttgggaagctctgcccccaccgagtggcttgcaaacgccttgtc
tccatgaatatgccactgaacagtgatggaactgtgatgttcaatgccactctctttgcg
ttggtcagaacagcactgaggatcaagacagaaggtaacctggagcaagccaatgaagag
cttagagcaataattaagaaaatctggaagcgcaccagcatgaagctgctggaccaggtg
gtgccccccgcaggtgatgatgaggtgaccgtcgggaagttctacgctactttcctgatt
caagaatatttccggaaattcaagaaacgcaaagaacagggcctggtgggcaagccgtcc
cagcgcaatgccctctccttacaggctggtttgcgcacacttcacgacatcgggccagag
atccgacgggcgatctcgggagacctgacagctgaagaagagctagataaggccatgaaa
gaagctgtttctgctgcctctgaagatgatattttccggagagctggaggcctgtttgga
aaccatgtcagctactaccaaagtgatggcaggagtgcattcccccagacatttaccacc
cagcgacctctgcacatcaataagtctggcaacaaccagggagacactgagtctccatct
cacgagaagctggtggactccaccttcactcccagcagctactcatcttcaggctccaat
gccaacatcaacaatgccaacaacactgccttgtgccgcttccccagcccacccagctac
cccagcactgtcagcacagtggaaggccacggggccccattgtcacccaccatccgtgtg
caggaagctccttggaaactaccctccaaaaggacgcattactacgaaacactgggacgc
tccagttccagagacagccagctggcaattgtttgccaagaggaagtgtctcaggatgag
acttatgatgaaaatttgaatgaagacattgagtactgtagtgaaccaagtctgctctct
actgaaatgctttcataccaagatgatgaaaacagacaacttactccaccagaaaacaac
aaaggagaggacacccggcactctccaaagaaagggtttctgcgctcctcagcactaggt
cgaagagcatcttttcacttagagtgtctgaaaagacagaaaaaccagggcgtagacgtc
tcgcagaagacagttctgcctttacatctggtacatcatcaggcgctagcggtggccggc
ctgagccccctcctgcagcgaagccattcccccaccatgttctcccggctgtgcgcaacg
ccgcccgccacgccctgcagccgcggctggccgcagcaggccatccccacactgcgtctc
gagggggcagagtccagtgagaagctcaacagcagcttcccatcagtgcactgcagctcc
ggcttccccgatggcaccggctgcagcagcccgaggagagccaggccggtctccctcacc
gtccccagccagagcgcagggagcagcaggcagtttcacggcagcgccggcagcctggtg
gaagcggtcttgatttcggaaggactgatgcagtttgctcaagatccaaaattcattgag
gtcacaacccaggagctcgcagacgcctgcgacatgacgatagaagagatggaaaatgca
gcagacaacattctcaatggtaacagcaagcagagccccaatggcaacctcttgcctttt
gttaactgcagggacgcagggcaggacagtgcaggcgaggaagaggaagaggtgcagagc
ccggattgtagaaaaagtcaggaggagctcaaggacagcaggatttatatcagcagcctg
tag
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integrated database retrieval system
