Cygnus atratus (black swan): 118250786 Help Entry 118250786         CDS       T09349                                  Symbol TRAF6 Name (RefSeq) TNF receptor-associated factor 6   KO K03175   TNF receptor-associated factor 6 [EC:2.3.2.27] Organism cata  Cygnus atratus (black swan) Pathway cata04010   MAPK signaling pathway cata04120   Ubiquitin mediated proteolysis cata04140   Autophagy - animal cata04144   Endocytosis cata04620   Toll-like receptor signaling pathway cata04621   NOD-like receptor signaling pathway cata04622   RIG-I-like receptor signaling pathway cata05132   Salmonella infection cata05168   Herpes simplex virus 1 infection Brite KEGG Orthology (KO) [BR:cata00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     118250786 (TRAF6)  09130 Environmental Information Processing   09132 Signal transduction    04010 MAPK signaling pathway     118250786 (TRAF6)  09140 Cellular Processes   09141 Transport and catabolism    04144 Endocytosis     118250786 (TRAF6)    04140 Autophagy - animal     118250786 (TRAF6)  09150 Organismal Systems   09151 Immune system    04620 Toll-like receptor signaling pathway     118250786 (TRAF6)    04621 NOD-like receptor signaling pathway     118250786 (TRAF6)    04622 RIG-I-like receptor signaling pathway     118250786 (TRAF6)  09160 Human Diseases   09172 Infectious disease: viral    05168 Herpes simplex virus 1 infection     118250786 (TRAF6)   09171 Infectious disease: bacterial    05132 Salmonella infection     118250786 (TRAF6)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:cata04131]     118250786 (TRAF6)    04121 Ubiquitin system [BR:cata04121]     118250786 (TRAF6) Enzymes [BR:cata01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      118250786 (TRAF6) Membrane trafficking [BR:cata04131]  Endocytosis   Clathrin-mediated endocytosis    Ubiquitin E3 ligases     118250786 (TRAF6) Ubiquitin system [BR:cata04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    TRAF proteins     118250786 (TRAF6) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TRAF-mep_MATH MATH_2 zf-TRAF TRAF6_Z2 zf-C3HC4_2 zf-C3HC4 zf-RING_UBOX zf-RING_2 zf-C3HC4_3 zf-C3HC4_4 zf-TRAF_2 zf-RING_5 SlyX Med21 Sina_ZnF RING_XB3-XBAT31 TRAF3_RING zf-RING_11 PspA_IM30 UPF0242 HAP1_N U-box Spc29 DUF1664 DUF16 Cortex-I_coil Motif Other DBs NCBI-GeneID:  118250786 NCBI-ProteinID:  XP_035408062 LinkDB All DBs Position 5:15867859..15889305 Genome browser AA seq 545 aa AA seqDB search MSLLQSNNSCGARDLESGCCAAMASACSVGAKEDSVSVSSGTGNPPSSFTEETQGYDVEF DPPLESKYECPICLMALREAVQTPCGHRFCKGCIVKSIRDAGHKCPVDNEILLENQLFPD NFAKREILSLTVKCPNKGCCMKMELRHLEDHQSHCDFSTVECPQCQGAFQKNHLKEHMTQ ECLRRQVCCPNCATSMAYEDKELHDQTCPLANVFCEYCNTMLIRQQMPNHYDNDCPTAPV PCFYSAFGCPEKMQRNELARHMQEFTQVHMRMMAQSFQNISVTATNPVPFINGLPFEPAL FSHVSHTPYNCNPEVENFKETIQQLEGRLVRQDHQIRELIAKMETQNIHMAELKRTIRNL EGKITEMEAQQCNGIYIWKIENFSGLQKAQKEERPVVMHSPGFYTGKPGYKLCLRLHIQL PNAQRCANFISLFVHTMQGEYDSHLPWPFQGTIRLSILDQSEGPERQNHEEVMEAKPELL AFQRPTIHRNPKGFGYVTFMHLQNLEQRTFVKDDTLLVRCEVLTRLDLNSLRREGFQARS TDGAV NT seq 1638 nt NT seq  +upstreamnt  +downstreamnt atgagcttgctacagagcaataacagttgtggagcccgagacctggaaagcggctgctgt gcagccatggccagcgcctgcagcgtaggagcgaaagaagatagtgtaagcgtcagcagc gggactggaaaccctccaagttcgtttacagaggaaacacaaggatacgatgtggagttt gatccgcccttggaaagtaaatatgagtgtccaatctgtctgatggctcttcgggaagcg gtgcagacgccatgtggacaccgtttctgcaaaggctgcattgtcaaatcaataagagat gcaggtcacaaatgtccagtagacaacgaaattctgctcgaaaatcaactttttcctgac aactttgctaaacgggaaatcctttcattaacggtgaagtgtcccaacaagggctgctgc atgaagatggagctgaggcatttagaggaccaccagtcgcattgtgatttctccaccgtg gaatgcccgcagtgccaaggagcctttcagaagaaccatctgaaagagcacatgacacag gagtgtctgcggcgtcaagtctgttgtcccaactgtgccacatctatggcttatgaagat aaagagcttcatgaccaaacctgtccccttgccaacgtattttgtgaatattgcaacaca atgctcatcagacagcagatgcctaaccattacgataatgattgtcctactgccccagta ccatgtttttatagtgcctttgggtgtcctgaaaagatgcagaggaatgaactggcacga catatgcaggagttcactcaggttcacatgagaatgatggctcagagttttcaaaatatc agtgttacggctacaaatcctgtaccctttatcaatggactaccatttgagcctgccctc ttctcccatgtgtcacataccccatataattgtaatccggaagttgaaaacttcaaagaa actattcagcagttggaaggtcgcctggtaagacaagatcaccaaatcagagaactcatt gctaaaatggagactcagaacattcacatggcagaactcaaacgtaccattcgaaatttg gagggaaaaattactgaaatggaggcacagcaatgtaatggtatttatatatggaagatt gaaaacttcagtggacttcagaaagcacagaaggaagagagacctgttgtgatgcacagt cctggcttctatactggaaaacctggctacaagctgtgtttgcgcttgcatatccagtta ccaaatgctcagcgttgtgctaattttatatctctgtttgtccacactatgcaaggagaa tacgacagccatctgccttggcctttccaaggcactatacgactttctattttggatcaa tcagaaggccctgaacggcagaatcatgaagaagtaatggaagccaagccagagttgcta gccttccagagaccaacaattcaccgcaatccaaaaggttttggttatgtgactttcatg cacctgcagaacttggagcaaagaaccttcgtaaaagatgacacccttctggtacgctgt gaagttctaacacggctggatttgaacagccttcgcagagaaggatttcaggctcgcagt actgatggtgctgtgtaa

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