Cygnus atratus (black swan): 118257198
Help
Entry
118257198 CDS
T09349
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
cata
Cygnus atratus (black swan)
Pathway
cata03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
118257198 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cata03000
]
118257198 (KDM2B)
04121 Ubiquitin system [BR:
cata04121
]
118257198 (KDM2B)
03036 Chromosome and associated proteins [BR:
cata03036
]
118257198 (KDM2B)
Enzymes [BR:
cata01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
118257198 (KDM2B)
Transcription factors [BR:
cata03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
118257198 (KDM2B)
Ubiquitin system [BR:
cata04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
118257198 (KDM2B)
Chromosome and associated proteins [BR:
cata03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
118257198 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
118257198 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
JmjC
Cupin_8
LRR_4
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
118257198
NCBI-ProteinID:
XP_035420779
LinkDB
All DBs
Position
17:complement(12574097..12684383)
Genome browser
AA seq
1017 aa
AA seq
DB search
MSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIPPTLQNLELYEEWVLSGKQSDIFLGDR
VERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVFGGNILHSFNVPMQLRIYEIEDRTRVH
AKFRYPFYYEMCWYVLERYVSCVTQRCHLSKEYQRESMLIDARRKHSIDSYSSDSWLDMD
EESCDAHIQEEKDDSLDKNSKSLVDGSSSPNSTHSEEKEGAGRKQKATVMRYLKRTLSNE
SDDSVKSTTPTDYPKTPTGSPATEVSTKWTHLTEFELKGLKALVEKLESLPENKKCVPEG
IEDPQALLEDMKNRAVGRPKGKLGTASAVKLAANRTTAGARRRRTRCRKCEACLRTECGE
CHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEESKFNLMLM
ECSICNEIIHPGCLKVKESDGVVNDELPNCWECPKCNHAGKTGKQKRGPGFKYASNLPGS
LLKEQKMNRDNKEVTDAAKRKGDCEETPRRKSEEHSKKTQVDSILRRKSDEVHLRRKRKF
EKPQEPSMRKRRRSWKASDDRAAMIKPLRRLKQEPEDELPEAPPRSKDSDQSRSSSPTAG
PSTEGAEPRDKKKFKMRRKRRLPNKELSKELSKELNQEIQKTENSLANENHQPIKSEPES
ENEEPKRALSNSERLHRFNKGLNGTPRELRHQLIPSLRSTPRGITRPPPSLSPPKCIQME
RHVIRPPPISPPPDSLPLDDGAAHVMQREVWMAVFSYLSHRDLCICMRVCKTWNRWCCDK
RLWTKIDLNHCKSITPLMLSGIIRRQPVTLDLSWTNISKKQLSWLINRLPGLRDLLLSGC
SWIAVSALCSSSCPLLRTLDVQWAEGLKDAQMRDLLSPPTDNRPGQIDNRSKLRNIVELR
LAGLDITDASLRLIIRHMPLLSKLNLSYCNHVTDQSINLLTAVGTTTRDSLTEINLSDCN
KVTDQCLSYFKRCGNICQIDLRYCKQVTKEGCEQFIAEMSVSVQFGQVEEKLLQKLS
NT seq
3054 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgaaaggatgcttcactgattttcatattgattttggtggcacttcagtgtgg
tatcacgttttccgtggggggaagatcttctggctgattccgcctactctgcagaatcta
gaactttatgaagaatgggtgctctcaggaaagcaaagtgatatctttctgggagacagg
gtggaaagatgccaaagaattgaactcaaacaaggctatacgttcttcattccttcaggg
tggatacatgcggtttatactccggtagattctctggtgtttggtggaaatatcctgcat
agctttaatgttcccatgcagcttcgcatctatgaaattgaggacagaacaagggtgcac
gccaaattccgttatcctttctactatgaaatgtgctggtatgttctggagagatacgtg
tcctgtgtgacccagcgctgccacctcagcaaagagtaccagagagaatcaatgttaatt
gatgcaagaagaaaacacagcatagatagctactcatcagattcgtggttagacatggat
gaagaatcttgtgatgcccatatccaggaggaaaaggatgacagcttggataagaactcc
aaatccctggtggatggctcctcctcgcccaacagcacgcactcagaggaaaaggagggt
gcagggagaaaacagaaagccacagtaatgaggtacctaaaaagaactttgtctaatgaa
tcagacgacagtgtaaaatcaacgacccccacggattatcccaaaacgccaacggggtct
ccagctacagaagtttcaaccaaatggactcacctcacagaatttgaactgaagggttta
aaagccctggtggaaaagcttgaatctctcccagagaacaagaagtgtgttccagaaggc
atcgaggatccgcaggctctcctggaggacatgaagaacagggcagtcggacggcccaaa
gggaagctgggcactgcttctgcggtgaagctcgcagctaaccggacgaccgctggagca
cgccggaggaggacgcgatgccgcaagtgcgaggcgtgtctgcggacagagtgcggcgag
tgtcacttctgcaaggacatgaagaagttcggggggcctggcaggatgaaacagtcctgc
attatgaggcagtgtatcgcaccggtgttgcctcatactgctgtatgtctggtgtgtgga
gaagctgggaaagaggacactgtggaagaggaggagagcaagtttaatctcatgctaatg
gaatgctccatttgtaatgaaataatacacccaggatgccttaaggtgaaggaatcagat
ggtgtggttaacgatgagctgccgaactgctgggagtgtccaaagtgcaaccatgcaggg
aaaactggaaaacaaaagcgcggaccaggattcaaatacgcatcaaatctcccaggctca
ttgctgaaggaacagaaaatgaacagagacaataaggaagtaacagatgctgcaaaacgg
aaaggggactgtgaagaaactcccaggcggaaatctgaggaacattccaaaaagactcaa
gttgactcaatactgaggagaaagtcagacgaagtacatctgcggaggaaaaggaaattt
gagaaaccccaggaaccctctatgagaaaacggcggcgatcgtggaaggcttcagatgac
cgagctgccatgatcaaacccctgcggcgcctcaagcaggagccggaggatgagctgcca
gaagcaccccccaggtccaaggacagtgaccagtcgcgctccagctcgcccaccgcgggt
cccagcacggagggcgccgagcccagggacaagaagaagttcaagatgaggcggaaaagg
cggcttcccaataaggaactgagcaaggagctcagcaaggagctcaaccaggagatccaa
aaaaccgagaacagccttgccaatgagaatcaccaacccatcaaatccgaaccggagagt
gaaaacgaggagcctaagcgcgctttgagcaacagcgagagactgcataggttcaacaag
ggtttgaacgggactccccgggagctgaggcaccagctcatccccagcctgcgaagcacc
cctcggggaataacccggcccccgccttcgctctctcctcccaaatgcattcagatggag
cggcacgttatccggccgcctcccatcagcccccctccggactcgctccccctggatgac
ggggcagcccacgtgatgcagcgggaagtctggatggctgtctttagctacctcagtcat
agagacttgtgcatctgtatgagagtttgcaagacctggaacagatggtgctgtgacaaa
agattatggaccaaaatagatttaaaccattgtaaatccatcactccacttatgcttagt
ggcattattaggagacagcctgtaacccttgatcttagctggacaaatatatctaaaaag
cagctgagctggcttatcaacagactgccaggtcttcgagacctgctgttatcagggtgc
tcatggatagcagtgtcagcactttgtagttccagttgtcctttactccgaactctggac
gtgcagtgggcagaaggcctgaaagacgcccaaatgagagacctcttgtcgccacccaca
gataaccggccaggtcagatcgacaaccggagtaagctacggaacatagttgaactgcgc
ctcgctggcctggatattaccgacgcgtctttgcggctgatcataaggcacatgcctctg
ctctccaaactcaatctcagttactgtaatcacgtgacagatcagtctattaacctgctg
accgcagttggaaccaccacgcgggattcattaacagaaattaatttatcagactgcaat
aaggttactgaccagtgcctgtcttacttcaaacgttgtggaaacatctgccagatcgac
ttgaggtactgcaagcaagtgacaaaagaaggctgtgagcagttcatagcagagatgtca
gtaagtgttcagtttgggcaagtggaagaaaaacttctgcaaaaactgagttag
DBGET
integrated database retrieval system
