Cygnus atratus (black swan): 118257198
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Entry
118257198 CDS
T09349
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
cata
Cygnus atratus (black swan)
Pathway
cata03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
118257198 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cata03000
]
118257198 (KDM2B)
04121 Ubiquitin system [BR:
cata04121
]
118257198 (KDM2B)
03036 Chromosome and associated proteins [BR:
cata03036
]
118257198 (KDM2B)
Enzymes [BR:
cata01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
118257198 (KDM2B)
Transcription factors [BR:
cata03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
118257198 (KDM2B)
Ubiquitin system [BR:
cata04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
118257198 (KDM2B)
Chromosome and associated proteins [BR:
cata03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
118257198 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
118257198 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
LRR_FBXL15
JmjC
Cupin_8
LRR_4
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
118257198
NCBI-ProteinID:
XP_035420779
LinkDB
All DBs
Position
17:complement(12574097..12684383)
Genome browser
AA seq
1017 aa
AA seq
DB search
MSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIPPTLQNLELYEEWVLSGKQSDIFLGDR
VERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVFGGNILHSFNVPMQLRIYEIEDRTRVH
AKFRYPFYYEMCWYVLERYVSCVTQRCHLSKEYQRESMLIDARRKHSIDSYSSDSWLDMD
EESCDAHIQEEKDDSLDKNSKSLVDGSSSPNSTHSEEKEGAGRKQKATVMRYLKRTLSNE
SDDSVKSTTPTDYPKTPTGSPATEVSTKWTHLTEFELKGLKALVEKLESLPENKKCVPEG
IEDPQALLEDMKNRAVGRPKGKLGTASAVKLAANRTTAGARRRRTRCRKCEACLRTECGE
CHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEESKFNLMLM
ECSICNEIIHPGCLKVKESDGVVNDELPNCWECPKCNHAGKTGKQKRGPGFKYASNLPGS
LLKEQKMNRDNKEVTDAAKRKGDCEETPRRKSEEHSKKTQVDSILRRKSDEVHLRRKRKF
EKPQEPSMRKRRRSWKASDDRAAMIKPLRRLKQEPEDELPEAPPRSKDSDQSRSSSPTAG
PSTEGAEPRDKKKFKMRRKRRLPNKELSKELSKELNQEIQKTENSLANENHQPIKSEPES
ENEEPKRALSNSERLHRFNKGLNGTPRELRHQLIPSLRSTPRGITRPPPSLSPPKCIQME
RHVIRPPPISPPPDSLPLDDGAAHVMQREVWMAVFSYLSHRDLCICMRVCKTWNRWCCDK
RLWTKIDLNHCKSITPLMLSGIIRRQPVTLDLSWTNISKKQLSWLINRLPGLRDLLLSGC
SWIAVSALCSSSCPLLRTLDVQWAEGLKDAQMRDLLSPPTDNRPGQIDNRSKLRNIVELR
LAGLDITDASLRLIIRHMPLLSKLNLSYCNHVTDQSINLLTAVGTTTRDSLTEINLSDCN
KVTDQCLSYFKRCGNICQIDLRYCKQVTKEGCEQFIAEMSVSVQFGQVEEKLLQKLS
NT seq
3054 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgaaaggatgcttcactgattttcatattgattttggtggcacttcagtgtgg
tatcacgttttccgtggggggaagatcttctggctgattccgcctactctgcagaatcta
gaactttatgaagaatgggtgctctcaggaaagcaaagtgatatctttctgggagacagg
gtggaaagatgccaaagaattgaactcaaacaaggctatacgttcttcattccttcaggg
tggatacatgcggtttatactccggtagattctctggtgtttggtggaaatatcctgcat
agctttaatgttcccatgcagcttcgcatctatgaaattgaggacagaacaagggtgcac
gccaaattccgttatcctttctactatgaaatgtgctggtatgttctggagagatacgtg
tcctgtgtgacccagcgctgccacctcagcaaagagtaccagagagaatcaatgttaatt
gatgcaagaagaaaacacagcatagatagctactcatcagattcgtggttagacatggat
gaagaatcttgtgatgcccatatccaggaggaaaaggatgacagcttggataagaactcc
aaatccctggtggatggctcctcctcgcccaacagcacgcactcagaggaaaaggagggt
gcagggagaaaacagaaagccacagtaatgaggtacctaaaaagaactttgtctaatgaa
tcagacgacagtgtaaaatcaacgacccccacggattatcccaaaacgccaacggggtct
ccagctacagaagtttcaaccaaatggactcacctcacagaatttgaactgaagggttta
aaagccctggtggaaaagcttgaatctctcccagagaacaagaagtgtgttccagaaggc
atcgaggatccgcaggctctcctggaggacatgaagaacagggcagtcggacggcccaaa
gggaagctgggcactgcttctgcggtgaagctcgcagctaaccggacgaccgctggagca
cgccggaggaggacgcgatgccgcaagtgcgaggcgtgtctgcggacagagtgcggcgag
tgtcacttctgcaaggacatgaagaagttcggggggcctggcaggatgaaacagtcctgc
attatgaggcagtgtatcgcaccggtgttgcctcatactgctgtatgtctggtgtgtgga
gaagctgggaaagaggacactgtggaagaggaggagagcaagtttaatctcatgctaatg
gaatgctccatttgtaatgaaataatacacccaggatgccttaaggtgaaggaatcagat
ggtgtggttaacgatgagctgccgaactgctgggagtgtccaaagtgcaaccatgcaggg
aaaactggaaaacaaaagcgcggaccaggattcaaatacgcatcaaatctcccaggctca
ttgctgaaggaacagaaaatgaacagagacaataaggaagtaacagatgctgcaaaacgg
aaaggggactgtgaagaaactcccaggcggaaatctgaggaacattccaaaaagactcaa
gttgactcaatactgaggagaaagtcagacgaagtacatctgcggaggaaaaggaaattt
gagaaaccccaggaaccctctatgagaaaacggcggcgatcgtggaaggcttcagatgac
cgagctgccatgatcaaacccctgcggcgcctcaagcaggagccggaggatgagctgcca
gaagcaccccccaggtccaaggacagtgaccagtcgcgctccagctcgcccaccgcgggt
cccagcacggagggcgccgagcccagggacaagaagaagttcaagatgaggcggaaaagg
cggcttcccaataaggaactgagcaaggagctcagcaaggagctcaaccaggagatccaa
aaaaccgagaacagccttgccaatgagaatcaccaacccatcaaatccgaaccggagagt
gaaaacgaggagcctaagcgcgctttgagcaacagcgagagactgcataggttcaacaag
ggtttgaacgggactccccgggagctgaggcaccagctcatccccagcctgcgaagcacc
cctcggggaataacccggcccccgccttcgctctctcctcccaaatgcattcagatggag
cggcacgttatccggccgcctcccatcagcccccctccggactcgctccccctggatgac
ggggcagcccacgtgatgcagcgggaagtctggatggctgtctttagctacctcagtcat
agagacttgtgcatctgtatgagagtttgcaagacctggaacagatggtgctgtgacaaa
agattatggaccaaaatagatttaaaccattgtaaatccatcactccacttatgcttagt
ggcattattaggagacagcctgtaacccttgatcttagctggacaaatatatctaaaaag
cagctgagctggcttatcaacagactgccaggtcttcgagacctgctgttatcagggtgc
tcatggatagcagtgtcagcactttgtagttccagttgtcctttactccgaactctggac
gtgcagtgggcagaaggcctgaaagacgcccaaatgagagacctcttgtcgccacccaca
gataaccggccaggtcagatcgacaaccggagtaagctacggaacatagttgaactgcgc
ctcgctggcctggatattaccgacgcgtctttgcggctgatcataaggcacatgcctctg
ctctccaaactcaatctcagttactgtaatcacgtgacagatcagtctattaacctgctg
accgcagttggaaccaccacgcgggattcattaacagaaattaatttatcagactgcaat
aaggttactgaccagtgcctgtcttacttcaaacgttgtggaaacatctgccagatcgac
ttgaggtactgcaagcaagtgacaaaagaaggctgtgagcagttcatagcagagatgtca
gtaagtgttcagtttgggcaagtggaagaaaaacttctgcaaaaactgagttag
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