Cygnus atratus (black swan): 118259098
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Entry
118259098 CDS
T09349
Symbol
BRCA1
Name
(RefSeq) breast cancer type 1 susceptibility protein isoform X6
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
cata
Cygnus atratus (black swan)
Pathway
cata03440
Homologous recombination
cata03460
Fanconi anemia pathway
cata04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
118259098 (BRCA1)
09124 Replication and repair
03440 Homologous recombination
118259098 (BRCA1)
03460 Fanconi anemia pathway
118259098 (BRCA1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cata01009
]
118259098 (BRCA1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cata04121
]
118259098 (BRCA1)
03036 Chromosome and associated proteins [BR:
cata03036
]
118259098 (BRCA1)
03400 DNA repair and recombination proteins [BR:
cata03400
]
118259098 (BRCA1)
Enzymes [BR:
cata01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
118259098 (BRCA1)
Protein phosphatases and associated proteins [BR:
cata01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
118259098 (BRCA1)
Ubiquitin system [BR:
cata04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
118259098 (BRCA1)
Multi subunit type E3
BRCC complex
118259098 (BRCA1)
Chromosome and associated proteins [BR:
cata03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
118259098 (BRCA1)
DNA repair and recombination proteins [BR:
cata03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
118259098 (BRCA1)
BRCA1-A complex
118259098 (BRCA1)
BRCA1-B complex
118259098 (BRCA1)
BRCA1-C complex
118259098 (BRCA1)
BRCA complex
118259098 (BRCA1)
FA (Fanconi anemia) pathway
Downstream FA components
118259098 (BRCA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT_assoc
BRCT
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_4
zf-RING_UBOX
zf-RING_2
BRCT_2
zf-C3HC4_3
zf-Nse
zf-RING_6
BRCT_3
RING_XB3-XBAT31
zf-RING_5
zf-RING_10
zf-MIZ
zf-ANAPC11
zf-RING_4
Zf_2nd_IFT121
Motif
Other DBs
NCBI-GeneID:
118259098
NCBI-ProteinID:
XP_035424253
LinkDB
All DBs
Position
25:complement(2381377..2405276)
Genome browser
AA seq
1844 aa
AA seq
DB search
MDLAVVAVGEVQNVLSAMQKNLECPICLDVVKEPVSTKCDHIFCRFCMYKLLSKKKKGVV
QCPLCKTEVTKRGLTENSRFKQLIEGLLEAIHAFELDTGVKFLNSHHLPKSSTEATTAKL
PCNESSVIQSKGFRNRKSAKENEQENCTLQGANVDAQRTDTSVKRCSLRNRKQKCDFEKG
VFIELGTDSSEELCKQAGNTGVGNKVVQISSQEKLEEPKSPEKGNEYSCNTRPTEPRAKE
IILPNVIGESDFSKEALSKKSTQNVAEHANPDQVNEVECQSSPLNILATDLLTERCDRID
NASPLKNGDKSFSKNAEEMDAQQTQCSYKSQEFDLEDSSENRLDKSKEIDAVVQSVEDVE
MCESENDSEKESPLEKLLQPETPHCPTLHQVSRKRLKRSIQKVNEWFSKSNEILSSNSSH
DDPAEASDVSGEGDALSDKDSCISEKTSPVVGFMETTVSEGNRRWSKQKKDSIKDKIFGK
TYERERKSNPPIIMKEILPTAKKEDVPAVQECLNNSRKDSLKRKRKAARHLQPEDFIKKK
DLEEAGGCPQSVNSCLGDAEKKKCNESSAVKENPPPEKRKGSMLAEFEEGGSMSKNATEK
VTCEHSDGELEPNNSDQKSTKNTSSAAKRCRRSTRTMRALQLVVDKNSGSPDPAETLIES
YPSSEEPRNVDSEQRQVRRSRRLQLLSEEMTKETAKRVVIKEASKCDSDQEGSVFGVEKT
ALVHDSECKDLCEQQGILSCKPLTNLESADLEANAVQISPKNSSETAETGKRLFNPAPLH
QHSNLNSSSPKAGSQEGEVLGNPFRLQSPSKTVVQTASHLPEGKRAESCTTLPQDKERCA
QNVPEGLRTEKSPMAKNVSELTKESEDSELDTQYLRNIFRNSKRLSFSLYPTPRKACEVD
GVASEKLKISRAAQVEKRHDKYLNTENLHKEKTAENLSDVCEREKMKSYESACASPVSCT
VSNAECARSGDCQDVSQVANRGNLMTPVRMGAARSEGKNRPQNRPQKGERGSEKTASTDV
GAESALRQNPDKSSRSQSDQSNTEEHIFQRTDLNTVSETCFSSESDQAEKAKFVDSEGPV
LCFQPGSMACPTACQQRSAEFNCKDTEKRGSKRRRVKGNEEESTQTASIGVPECLVAETL
EEPFKGSGDCTDMSETPDGLMCSDDDSEENVSFCEARRKDSSAVFVKSDLVKERNNGGGS
SKPRPKGIQRPRRRAQKLQSSSEESSEDEDLPCFQALIFGKSVSTPLQTNKQTTSAVGSS
GNPSALPRGGSREDNNVQKTPDAAQSNGCASPSQESECSVNLFSSQSNVSEESVDGAQEL
KKPLLQGHASKQPSNVSESKETLQSCTGGLKRRKTNSKDECQEDPNQGTNLGEASGYDSE
TSHVGDSCGPFSQGEILSTQQKNAMQNNLKKLQQEMAALEAVLQQHGSQDSELLPSFAVE
QMRQRGAESTSEGNFANHKCSTSTGFSADDVHVIPSDSSNSEVKELGIERSPEPPYASLK
SFWSKRPDLEEDLQHDGVMENKAPQETKPVQEAVQEYSQSEEENEDEKSGTKLNKASVLN
DLCGNVTRSPNASSSFVKPPHLKTAEATNSSTVAQNDNKSRSQGCKLKRSVCFPTSVLHN
AAGKENATSPVVTNRKKMSIVASGLNQTEHMVVQKFARKTQSTFSNHITDGTTHVIMKTD
KELVCERTLKYFLGIAGRKWVVSYQWVIQSFKEGMILEEENFEVRGDVINGRNHQGPKRA
RQSLTEKIFKDFEICCYGPFTDMTTGHLEWMVELCGASVVKQLHLFTHKTNSTAVVVVQP
DAWMEGTSYKAVQQKNNVAVVTREWVLDSVACYECQELDAYLVS
NT seq
5535 nt
NT seq
+upstream
nt +downstream
nt
atggacctggccgtggttgccgttggagaggtgcagaacgtgctctcggctatgcagaag
aacttggagtgccccatttgcttggatgtagtgaaagagccagtttcaacaaaatgtgat
cacatattctgcaggttttgtatgtataaactcctcagcaaaaagaaaaaaggtgtggta
cagtgtcctctgtgtaagactgaagttacgaagagaggtcttacagaaaattccagattt
aagcagctgatcgaaggactgttggaagctatccacgcatttgagcttgacactggagta
aaatttttaaacagccatcaccttcctaaatcatccacagaagccactactgcaaagctt
ccatgtaatgaaagttctgtcatccagagtaagggtttcagaaacaggaaaagtgctaaa
gaaaatgaacaagaaaactgcaccttgcagggagctaatgtggatgcacagcgtacagac
accagtgtgaaaaggtgttccctaagaaaccgaaaacagaaatgtgactttgaaaaagga
gtatttatagagcttggcactgattcatctgaagagctttgcaaacaggcaggcaatact
ggggtaggaaacaaagtggttcagatttcatctcaagaaaagctagaagaacctaagagc
cctgagaaggggaatgaatattcttgcaatacacgacctacggagccgagagctaaagaa
ataattctaccaaatgtcataggtgaaagtgacttctcaaaggaagccttgagcaagaaa
agcacgcaaaacgtcgctgaacatgccaatcctgaccaagtgaatgaggtggaatgccag
agttctcctttaaacattcttgccacagacctgctcacagagaggtgtgacagaatagat
aatgccagtcccttaaagaacggggacaagtctttttctaagaatgcagaagaaatggat
gcacagcaaactcagtgcagttataaaagtcaagagtttgacttagaagacagctctgag
aacagactggataaaagcaaggaaatagatgctgttgtgcaaagtgtggaagatgtggaa
atgtgtgaatctgagaatgattctgaaaaagaatctcccctagagaagctccttcagcca
gagacaccacactgtcctacactgcatcaggtttctaggaagagattgaaacgaagcatt
cagaaagtcaatgaatggttttcaaaaagcaatgagattctatcttccaattcatcccat
gatgatcctgctgaggcaagtgatgtttcaggtgaaggagatgctttatcagataaagat
tcatgtatttcagagaagactagccctgtggtaggtttcatggaaactacagtgtctgaa
ggaaacaggagatggtccaaacaaaaaaaagacagcatcaaagacaaaatatttggtaaa
acatatgagagagagaggaagtcgaatccccctattatcatgaaagagatcttacctact
gcaaaaaaggaggatgtgcctgctgttcaagagtgcttgaataattccagaaaagacagc
ctaaaacgaaaaaggaaggctgcccgtcacctacagcctgaggacttcatcaagaaaaaa
gatctagaggaggcaggtggatgccctcaaagtgttaactcgtgccttggagatgctgaa
aagaaaaaatgcaatgaaagttctgctgttaaggagaatcccccgcctgagaaaagaaag
ggtagtatgctagcagaatttgaggaaggaggatccatgtcgaaaaatgctactgaaaag
gtgacgtgcgagcactccgatggagagctagaaccgaataactctgatcagaagagcact
aaaaatacaagttctgcagcaaaaagatgcaggcgttcaactagaactatgcgcgcttta
cagttagtagtggataaaaactctggttctcctgatccagctgagacactgattgagagc
tacccaagcagtgaagaaccaaggaatgttgattctgagcaacggcaagtcaggcgcagt
aggaggctccagttactttctgaagaaatgacaaaagagacagcaaaaagggtagtaatt
aaggaagcaagcaaatgtgacagtgaccaggaagggtctgtctttggagttgaaaagact
gcgttagttcacgattctgaatgcaaagacctgtgtgagcagcagggtatattgagttgc
aagccactcaccaatctggagagtgctgatttggaagcaaatgcagtacagattagtcca
aaaaattcatccgagactgcagaaactggaaaaaggctgttcaatcctgcacctttacac
cagcattcaaatttgaattcctcttcacccaaagcaggttcgcaagaaggtgaggtgcta
ggtaaccccttccgcctacagtctccttcaaagactgttgtgcaaactgcttcccacctg
cctgaagggaagagggctgaatcgtgtactactttaccccaggacaaagagcgctgtgca
caaaatgttccagagggcctcagaactgaaaagtcaccgatggctaaaaatgtttcagaa
ctgaccaaggaatctgaagacagtgagctagacacgcaatatctgcgaaatatatttagg
aattcaaagcgtctatcgtttagcctttatcctactcccaggaaagcatgtgaagtagat
ggcgttgcatctgagaagctaaaaatttcacgtgctgctcaggtagaaaaaaggcatgat
aaatatttaaatacagaaaacttgcacaaagagaaaactgccgagaacttgagtgatgtt
tgtgagagagagaagatgaagagctatgaatctgcttgtgctagtccggtgtcgtgcact
gtcagcaatgctgaatgtgcgcgctctggggactgtcaagatgtttcacaggttgctaat
cgagggaatttgatgacaccggtaagaatgggtgctgcgaggagtgaaggcaaaaacaga
ccacaaaacagaccacaaaagggagagcggggaagtgaaaagacagcgtcaactgatgta
ggggcagaaagtgcgttgagacagaatccagacaaaagcagtagaagtcaaagtgatcag
agtaatacagaagagcacattttccagaggacagatcttaacacagtcagtgaaacgtgc
ttcagttcagaaagcgatcaagcagaaaaggccaaatttgttgacagcgaaggaccagtg
ctatgttttcagcccggatcaatggcttgtcctacagcttgtcagcaaaggtctgcagag
ttcaactgcaaagacactgaaaaaagaggtagcaaaagaagacgagtaaagggcaatgaa
gaggaatcaacccaaactgccagcataggggtgccggagtgtttagttgcagagactcta
gaagaacctttcaaaggcagcggtgattgtacagatatgtctgaaacccccgatggctta
atgtgctccgatgatgatagtgaagagaacgtcagcttttgtgaagctcgtaggaaagac
agttctgccgtgtttgtaaaaagtgacttggtgaaagaacgaaacaacggaggtggtagt
tccaagccacgacctaaagggattcagaggcctcggagaagggcacagaaactgcagtct
tcatctgaagaatctagtgaggatgaagacttgccatgttttcaggcattaatatttggc
aagtcagtaagcacacctttgcagaccaataagcagacgacgtctgcggtggggtcttca
ggaaatcccagcgcgttgcctcggggtggaagtcgtgaggacaacaacgtgcagaaaaca
cctgacgctgcccaaagcaatggctgtgcttcaccaagccaggagtcagaatgctctgtg
aacttgttttcttcccagtccaacgtgtctgaagagtcagttgatggagcgcaggagctg
aagaaacctttattacaaggtcacgcgtccaaacaaccgagcaatgtgagcgagagcaaa
gaaacccttcaaagttgcactggagggctgaagagaagaaaaacaaactccaaagatgaa
tgccaagaagacccaaaccaggggacaaacctaggtgaagcatctggatatgacagtgaa
acaagtcatgtaggggattcatgtggaccattctctcagggtgaaatcctttctacacag
cagaagaatgctatgcagaacaacctaaaaaagctacaacaagaaatggctgcgcttgaa
gcagtgctacagcaacatggaagtcaggactccgagctcttaccctcgtttgcagtggaa
caaatgaggcaaagaggagcagagtcaacctcggaaggaaattttgcaaatcacaaatgc
agcacttcaacgggattttcagctgatgatgtccacgttataccaagtgattcttctaac
agtgaagtaaaagagttaggaattgaacggtctcctgaaccgccgtatgcctctctgaaa
tccttttggtcaaagagaccagatttggaggaagaccttcagcatgatggtgtcatggag
aacaaagctcctcaagagacaaagcctgtgcaggaagcagtgcaagaatatagtcagagt
gaagaagaaaatgaagatgagaagtctgggactaaattaaacaaggcatctgtcttaaat
gatctctgtggaaatgtgaccaggagtccaaatgcctcttcctcctttgtaaagcctcct
caccttaaaactgcagaagcaacaaatagttctactgtagctcagaatgataataaaagc
cgttcccaaggatgtaaactgaagagaagcgtgtgttttcctacatctgtcctgcacaat
gcagctgggaaagaaaatgctacaagtccagttgtgactaacaggaaaaaaatgtcaatt
gtggcatcgggtctgaatcaaactgaacatatggtggtccagaagtttgccagaaaaact
caaagcactttctctaatcacattactgatggaacaacacacgtcataatgaaaacagat
aaggagctggtgtgtgaacggacgttgaagtactttctgggtattgcaggaagaaaatgg
gtagttagttatcagtgggtaattcagtcttttaaagaaggaatgatactggaagaggag
aactttgaagttagaggagatgtaatcaatgggagaaaccaccaaggtcctaagagagca
agacagtctctgactgaaaagatctttaaagactttgagatctgctgctatggtcctttc
actgatatgactacagggcatcttgaatggatggtggagctttgtggtgcctctgtagtg
aagcaacttcatctgttcacccacaaaacgaattctactgctgttgtggttgtgcagcca
gatgcttggatggaaggcacaagctataaagcagtccagcaaaagaacaatgttgccgtg
gtgactcgagagtgggtgctagacagcgttgcttgctacgagtgccaggagcttgatgct
taccttgtgtcctaa
DBGET
integrated database retrieval system
