Cygnus atratus (black swan): 118259236
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Entry
118259236 CDS
T09349
Symbol
RFNG
Name
(RefSeq) beta-1,3-N-acetylglucosaminyltransferase radical fringe
KO
K05948
fringe [EC:
2.4.1.222
]
Organism
cata
Cygnus atratus (black swan)
Pathway
cata00514
Other types of O-glycan biosynthesis
cata04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00514 Other types of O-glycan biosynthesis
118259236 (RFNG)
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
118259236 (RFNG)
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
cata01003
]
118259236 (RFNG)
Enzymes [BR:
cata01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.222 O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
118259236 (RFNG)
Glycosyltransferases [BR:
cata01003
]
Glycan extension
O-Glycan
118259236 (RFNG)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Fringe
Galactosyl_T
DUF1180
Motif
Other DBs
NCBI-GeneID:
118259236
NCBI-ProteinID:
XP_035424510
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Position
18:complement(12998046..13006202)
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AA seq
390 aa
AA seq
DB search
MSSSCLGLRRACVLLSVTAAAVLLLLLPRGQPPAAPRRRPPPAAAPSGPPPKRAGSGAAQ
PAGSDVPGARAGSRGERGGGGGGGPGAGAGGRGGSLGGTAQPARQGRLGPSSGSAKESLE
LKDIFIAVKTTRKYHKTRLDLLFQTWISQARGQTFIFTDWEDQELRLKAGDHMINTNCSA
VHTRQALCCKMSVEYDKFLESGQKWFCHVDDDNYVNPRTLLRLLSAFSHSQDVYVGRPSL
DHPIEAADHVQSDGSKTSVKFWFATGGAGFCISRGLALKMSPWASLGNFISTAERVRLPD
DCTIGYIIEGLLEVKLLHSPLFHSHLENLQRLRGESVLQQVTLSYGDPENKRNVVSVGGV
FGLQQDPTRFKSVHCLLYPDTIWCPTKKMF
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgagcagctcctgcctggggctccgcagggcctgcgtcctgctctccgtcaccgccgcc
gccgtcctcctcctgctgctgccccggggacagccccccgcggcgccccgccgccgcccg
ccgcccgccgccgctcccagcgggcccccgccgaagcgggcgggctccggcgcagcgcag
cccgcgggcagcgacgtgcccggcgctcgggcgggctcgcgcggggagcggggcggcggc
ggcggcggcggcccgggggccggggcgggcggccggggcgggagcctcggcggcaccgcg
cagcccgcgcggcagggccgcctcgggccttccagtggctcggccaaggagagcctggag
ctgaaggacatcttcatcgcggtgaagacgacgaggaagtatcacaaaacgcgcctggac
ttgcttttccaaacttggatctcccaggcgagaggacagacatttatattcacagactgg
gaggatcaggagctacgcctgaaagcaggggatcatatgatcaacaccaactgttcagct
gtccacacgcggcaagctctctgttgcaagatgtctgtggaatatgataaattcctagaa
tctgggcaaaaatggttttgccacgtggacgatgacaactatgtgaacccacggactctc
ctgcgtctcttatctgccttctcacacagccaggatgtctatgtggggcgaccaagtctg
gaccatcccattgaagcagctgaccatgtccaaagtgatggatcaaagacaagcgtgaaa
ttctggtttgccacaggtggagcagggttctgtatcagcagaggtcttgctctgaagatg
agtccctgggccagcctgggtaacttcatcagtactgcagaaagagtgcgtcttcctgat
gattgcacgattggctacatcattgaagggctgctggaggtaaagttgctgcacagcccg
ttgttccattcccatctggaaaatctgcagagactgcgaggcgagtctgtgctgcaacag
gtaaccctaagttatggagaccctgagaacaaacgcaatgttgtgagtgtgggaggagtg
tttgggcttcagcaagatccaacccgatttaaatctgtccattgtcttctgtatcctgac
actatctggtgccctactaagaagatgttctaa
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