Corynebacterium atrinae: CATRI_05445
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Entry
CATRI_05445 CDS
T09346
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
catr
Corynebacterium atrinae
Pathway
catr03030
DNA replication
catr03410
Base excision repair
catr03420
Nucleotide excision repair
catr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
catr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CATRI_05445 (ligA)
03410 Base excision repair
CATRI_05445 (ligA)
03420 Nucleotide excision repair
CATRI_05445 (ligA)
03430 Mismatch repair
CATRI_05445 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
catr03032
]
CATRI_05445 (ligA)
03400 DNA repair and recombination proteins [BR:
catr03400
]
CATRI_05445 (ligA)
Enzymes [BR:
catr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CATRI_05445 (ligA)
DNA replication proteins [BR:
catr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CATRI_05445 (ligA)
DNA repair and recombination proteins [BR:
catr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CATRI_05445 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CATRI_05445 (ligA)
MMR (mismatch excision repair)
DNA ligase
CATRI_05445 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CATRI_05445 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
WJY63181
LinkDB
All DBs
Position
1089462..1091501
Genome browser
AA seq
679 aa
AA seq
DB search
MTEQNSDLRRQWNELAEEVRHHRDLYYNDQPSIPDADFDRLFAQLQQLEADHPELAVPDS
PTMEVGAVVSSTFANVEHLERMMSLDNVFDDEELTEWLTRTPSETYLAELKIDGLSLALV
YRDGRLERAATRGDGRIGEDVTANARVIEDIPHSLTPHPDSPIPALIEVRGEVFIAVEDF
SQVNELRQAEGGKPFANPRNAAAGSLRQKNPEDVKKRRLRMVAHGIGAREGFAPATQHEA
YLALAAWGLPVSPYTEQVHTPEQVREKVAYWADHRHDAIFEMDGLVVKVDSIAEQRALGS
TSRAPRWAIAYKYPPEEVTTVLLDIQVGVGRTGRVTPFAIMEPVFVAGSTVSMATLHNQT
EVIRKGVLIGDTVVIRKAGEIIPEVLGPVVEKRDGTEREFIFPTLCPSCGTRLAPQKEGD
ADWRCPNTRSCPAQLSARLTYLAGRGAFDIEALGEKGAQDLIRTGILEDEAGLFDLTSTD
LESSKVYTTNAGKVNASGRKLLANLESAKKADLWRVIVALSIRHVGPSAARALASRFRSL
KVLFDAEVTDIADTDGVGTIIAESLADWYDVDWHRQIVDSWAHAGVTMEDESTDLAEQTL
DGLTVVVTGSLENFTRDGAKEAIISRGGKASGSVSKKTDFVVVGENAGSKETKARDLGLT
ILDEAGFIQLLEEGPPSAM
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
gtgactgagcagaactccgacctccgccgacagtggaacgaactggccgaagaagtacgc
caccaccgcgacctctattacaacgatcagccctcgatccccgacgccgactttgaccgg
ctatttgcccagctgcagcagcttgaggcggaccacccagagctcgccgtgccggatagc
ccgacgatggaggtcggcgcggtcgtctcctcgaccttcgccaacgtcgaacacctcgag
cgcatgatgagcctggataacgtcttcgacgacgaagaactcaccgaatggctgacgcgt
acgcccagcgagacctacctcgccgagctgaaaatcgacggcttgtcgttggcgctggtc
tatcgggacggccgcctggagcgggccgcgacgcgtggagatggccggatcggcgaggat
gtcaccgccaatgcccgggtgattgaggacatcccgcattctttgaccccgcatccggat
tctcccatccccgcactcattgaggtccgcggcgaggtgttcatcgcggtcgaggacttc
tcccaggtcaatgaacttcgccaggccgaaggtggtaagccctttgccaatccacgcaat
gccgccgccggatctttgcgccagaaaaacccggaggatgtgaaaaagcgccgcctgcgc
atggttgcccacggcatcggtgctcgcgaggggtttgcgccggcgacccagcacgaggcc
tatttggcgctggctgcctgggggttgcccgtcagtccctacaccgagcaggtccatact
ccggagcaggtgcgcgagaaagtggcctactgggccgatcaccgccatgacgcgatcttt
gaaatggacggtttggtggtcaaggttgattccatcgccgagcagcgcgctcttggctcc
accagccgggcgccgcggtgggcgatcgcctacaaatacccgccggaggaagtaacgacg
gttcttctcgacattcaggttggggtgggccgcacgggtcgcgtcactcctttcgcgatc
atggagcccgtgtttgtcgccggctcgaccgtgtccatggcgacgttgcacaatcagacc
gaggtcatccgcaagggcgtgctcatcggcgatacggtggtcatccgcaaggcgggcgag
atcatcccggaggtgctcggcccggtcgtggagaagcgggacggcaccgagcgcgagttc
attttccccacgttgtgcccctcctgcggcacccgtctcgctccgcagaaagagggcgac
gccgattggcgctgccccaacacgcgttcctgccccgcgcagctgtctgcccgcctgacc
tacctggcggggcgcggagccttcgatattgaagcgctgggggagaagggcgcccaggat
ctcattcgcaccggcatcttggaggacgaggcaggcttgttcgacctcacctcgacggat
ctggagtcctcgaaggtgtacacgaccaatgccggcaaggtgaacgcctccggtcggaag
ctgctggccaacctggaatcggcgaagaaggctgacctgtggcgcgtcattgttgccctg
tcgatccgccatgtcgggccctcggcagctcgcgccttggcctcacgtttccgctcgttg
aaggtgcttttcgacgccgaggtcaccgacatcgccgacaccgacggcgtgggcacgatc
attgctgagagcctcgccgactggtacgacgtcgactggcaccgccagatcgtcgattct
tgggcgcacgccggggtgaccatggaggatgagagcaccgacctcgccgagcagacctta
gacggtctgacggttgtggtcacgggatccctggagaacttcacccgggatggcgccaag
gaggcgatcatttcccgcggaggtaaggcatcgggctcggtatcgaaaaaaactgacttt
gtggtggtcggggagaacgctggctccaaggaaaccaaggcccgcgacctagggttgacg
atcctcgacgaggccggatttatccagctgttggaagaaggccctccctcggccatgtga
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