Catenovulum adriaticum: OLW01_05435
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Entry
OLW01_05435 CDS
T08659
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
catt
Catenovulum adriaticum
Pathway
catt03030
DNA replication
catt03410
Base excision repair
catt03420
Nucleotide excision repair
catt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
catt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OLW01_05435 (ligA)
03410 Base excision repair
OLW01_05435 (ligA)
03420 Nucleotide excision repair
OLW01_05435 (ligA)
03430 Mismatch repair
OLW01_05435 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
catt03032
]
OLW01_05435 (ligA)
03400 DNA repair and recombination proteins [BR:
catt03400
]
OLW01_05435 (ligA)
Enzymes [BR:
catt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OLW01_05435 (ligA)
DNA replication proteins [BR:
catt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OLW01_05435 (ligA)
DNA repair and recombination proteins [BR:
catt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OLW01_05435 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OLW01_05435 (ligA)
MMR (mismatch excision repair)
DNA ligase
OLW01_05435 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OLW01_05435 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
RNA_ligase
EarP
Motif
Other DBs
NCBI-ProteinID:
WAJ71243
LinkDB
All DBs
Position
1199455..1201494
Genome browser
AA seq
679 aa
AA seq
DB search
MNDSLNQIKQQISELRSLLEDYNYQYYVMDNPSVPDAEYDRVMRELISLEKAHPEFQSPD
SPSQKVGGEALSVFEQVEHRVPMLSLDNVFSDDELKAFEQRIFDRLKNNQAIEFSCEPKL
DGLAISILYREGKLVQAATRGDGRIGENVTDNIKTIRAIPLKLRGDYPAELEVRGEVFMP
KTGFEKLNEQQKEKGNKVFANPRNAAAGSLRQLDSKITAARPLAFYAYSMGYFEPESDIA
NSHFERMMQLKNWGLPVCPVIKKVTGSQALAEYYDWIGEQRNSLSYEIDGVVYKVDSIEL
QQNLGFVARAPRWATAHKFPAQEEITQLLDVEFQVGRTGAITPVARLQPVSVGGVTVSNA
TLHNADEIARLQIKIGDTVIIRRAGDVIPQVVSVVEEKRTEAANLREIEFPTECPVCGSQ
VERIEDEAITRCSGGLICGAQLKESIKHFASRKALDVDGLGNKIVEALVDLELIKNPADL
FSLTVEQITTMDRMGDKSALNLVNALDKAKQTTLAKFLYALGIREVGEATANNLALHFKS
LDAVKNANYDQLIEVSDIGKIVAEHIVSFFAEEHNQTVIQALLDAGISWPQIETLSVDEQ
PLKDQIYVLTGTLTTMGRNDAKAHLQNLGAKVTGSVSAKTHYLVAGESAGSKLTKAQDLG
VEVLTEDDLTQLLQTYGAI
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgacagcttaaaccaaattaaacagcaaatctctgaattgagaagcttattagaa
gattataattaccaatattatgtaatggacaacccaagtgtgccagacgcagaatacgac
agagtcatgcgagagcttatctcgctagaaaaagcgcaccctgaatttcaaagcccagac
tcgccatcacaaaaagtgggcggcgaagcattaagtgtatttgagcaagttgaacataga
gtccctatgttgtcgttagataacgtttttagcgatgatgaactaaaagcctttgagcaa
cgcatttttgatcgtcttaaaaataatcaagccattgaatttagttgtgaacccaaatta
gatggcttggccatttctattttatatcgtgaagggaaactagttcaggcagcaacacga
ggtgatggccggattggtgaaaacgtaaccgataatatcaaaaccatacgggctattccg
cttaaactcagaggcgattatccggctgagcttgaagtgcgcggtgaagtatttatgcca
aaaacaggttttgaaaaactaaacgaacagcaaaaagaaaaaggcaataaagtatttgcc
aacccacgaaatgctgccgctggtagtttacgtcaacttgattctaaaattaccgctgcc
agacctttagctttttatgcctattcaatgggatattttgagcctgaatcagacattgct
aactcacactttgagcgcatgatgcaattaaaaaactggggcctaccagtgtgtccagtt
attaaaaaagtcacaggcagccaagcgttagcagaatattatgattggataggtgagcaa
cgtaactcactaagctatgaaattgacggggttgtttataaagttgattcaattgagctt
caacaaaacttaggttttgtagcacgtgcaccgcgctgggcaaccgcacataaatttccg
gcacaagaagaaataacccaattgctagatgttgaatttcaagttgggcgcaccggcgca
attacgccggttgctcggttgcaaccagtttcagttggcggtgtcacggtttctaacgcc
actttacacaatgcggatgaaattgctcgcctacagattaaaattggcgatactgtaatt
atccggcgagcgggggatgttatccctcaagttgtctcagttgttgaagaaaaacgtacc
gaggctgctaaccttcgtgaaattgagttccctacagaatgtccagtatgcggctctcag
gttgaacgaattgaagatgaagcaataacgcgctgcagtggtggtttaatttgtggtgcc
cagctaaaagaatcgattaaacattttgcttcacgtaaagcattagatgtggatggttta
ggtaacaaaatcgtagaagccttagttgatttagaactaataaaaaatccggctgatttg
ttttcgttaacggttgaacaaattaccaccatggatagaatgggcgataaatctgcactt
aacttagttaatgcacttgataaagctaagcaaaccacattagctaaatttttgtatgcg
ttaggcattcgtgaagtaggggaagccactgccaataatttagcgctgcattttaaaagc
ttagacgccgttaaaaatgcaaattatgaccagttaattgaagtcagtgatattggcaag
atagtcgcagagcatattgtttctttttttgccgaagaacataatcaaactgtgattcag
gcgctgctagatgcaggcattagctggcctcaaattgaaacgttaagtgttgacgaacaa
ccgctaaaagatcaaatttatgtgttaacaggtactttaaccaccatggggcgaaatgat
gctaaagcgcatttacaaaatttgggtgccaaagtaacaggtagcgtatcagctaaaacc
cattatttggtagcgggtgaaagtgcaggctctaaattaaccaaagcgcaagatctggga
gtcgaagttttaaccgaagacgatttaactcaattattgcaaacgtatggcgcaatataa
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