Carassius auratus (goldfish): 113041481
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Entry
113041481 CDS
T07313
Name
(RefSeq) TAR DNA-binding protein 43-like isoform X1
KO
K23600
TAR DNA-binding protein 43
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113041481
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caua03019
]
113041481
Messenger RNA biogenesis [BR:
caua03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
113041481
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TDP-43_C
TDP-43_N
RRM_1
RRM_7
RRM_PARP14_3
RRM_3
Motif
Other DBs
NCBI-GeneID:
113041481
NCBI-ProteinID:
XP_026055834
Ensembl:
ENSCARG00000009955
UniProt:
A0A6P6J6C0
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Position
23:complement(15013297..15018255)
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AA seq
402 aa
AA seq
DB search
MTECYIRVAEDENEEPMEIPSEEDGTVLLSTVSAQFPGACGLRYRSPVSQCMRGVRLVEG
VLHAPEADWGSLVYVVNYPKDNKRKMDEMDAASAVKIKRGVQKTSDLIVLGLPWKTTEQD
LKDYFSTFGEVIMVQVKRDAKTGNSKGFGFVRFTDYETQVKAMSQRHMIDGRWCDCKLPN
SKYFLEQAGPDEPMRSRKVFVGRCTEDMTADELRQFFMQYGEVTDVFIPKPFRAFAFVTF
ADDQVAQSLCGEDLIIKGTSVHISSAEPKHNNSRQMMDRGRFGGFGGQGFGSSRSPNSNV
NFGALSLNPAMMAAAQAALQNSWGMMGMLANQQNQTAASGTTPSGQNSGGRDQNQSYNTS
SNNYNTGSSASLGWGAGTNSGSSGGFNSGFGSSMETKSSWGM
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgacggagtgttatattcgcgtcgcggaggacgagaacgaggagccgatggagatcccg
tccgaggaggatggcaccgtgctgctctccaccgtctccgcgcagtttcccggagcctgc
ggccttcgataccgtagccccgtgtctcagtgcatgagaggggtccgactggtggagggg
gttcttcatgcacccgaggcagactggggcagtctggtatatgtggtcaattatccaaaa
gataataagaggaagatggatgaaatggatgctgcatcggctgtgaagatcaagagaggt
gtgcagaagacatcagatttgattgtgcttgggttgccatggaaaacaactgagcaagac
cttaaagattacttcagtacttttggagaggtgatcatggtgcaggtgaaaagagatgca
aagaccggaaattccaaaggatttggttttgtaagatttacagactatgaaacacaagta
aaagccatgtcccagcggcatatgattgatggaagatggtgcgactgcaaacttcccaac
tcaaagtatttcctggaacaggctggcccggatgagcctatgagaagcaggaaagtattt
gtgggccgctgcaccgaggacatgacagccgatgagcttagacagttttttatgcagtac
ggcgaagtcacagacgtgttcattcccaaacctttccgagcctttgcctttgtcaccttt
gctgatgatcaggttgcccagtctctgtgtggcgaggacctgatcattaaaggaaccagt
gtgcacatctccagtgctgagccaaagcacaataatagtaggcaaatgatggatcgtggg
cggttcggggggtttggggggcagggctttggcagtagtcgcagtcccaacagtaatgtg
aattttggggcccttagtttgaatccagccatgatggcagctgctcaggcagcccttcag
aatagctggggcatgatgggaatgctggccaatcagcagaatcagacagctgcttccggc
acaacccctagcggacagaacagcggtggtagagatcagaaccagagttacaacacaagc
agcaataactacaacaccggcagctcagctagtcttgggtggggggcgggaaccaattca
ggctcgagcggtgggttcaactccggttttggatctagcatggagacaaagtccagctgg
ggaatgtag
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