KEGG   Carassius auratus (goldfish): 113049861
Entry
113049861         CDS       T07313                                 
Name
(RefSeq) TNF receptor-associated factor 2-like isoform X1
  KO
K03173  TNF receptor-associated factor 2 [EC:2.3.2.27]
Organism
caua  Carassius auratus (goldfish)
Pathway
caua04010  MAPK signaling pathway
caua04137  Mitophagy - animal
caua04141  Protein processing in endoplasmic reticulum
caua04210  Apoptosis
caua04217  Necroptosis
caua04621  NOD-like receptor signaling pathway
caua04622  RIG-I-like receptor signaling pathway
caua04920  Adipocytokine signaling pathway
caua05132  Salmonella infection
caua05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:caua00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    113049861
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    113049861
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    113049861
  09143 Cell growth and death
   04210 Apoptosis
    113049861
   04217 Necroptosis
    113049861
 09150 Organismal Systems
  09151 Immune system
   04621 NOD-like receptor signaling pathway
    113049861
   04622 RIG-I-like receptor signaling pathway
    113049861
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    113049861
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    113049861
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    113049861
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:caua03019]
    113049861
   04121 Ubiquitin system [BR:caua04121]
    113049861
Enzymes [BR:caua01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     113049861
Messenger RNA biogenesis [BR:caua03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     113049861
Ubiquitin system [BR:caua04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRAF proteins
    113049861
SSDB
Motif
Pfam: TRAF-mep_MATH MATH_2 TRAF_BIRC3_bd zf-TRAF TRAF2_zf zf-C3HC4 TRAF3_RING TRAFD1-XIAF1_ZnF ADIP zf-C3HC4_2 zf-RING_5 zf-C3HC4_4 Paramyxo_NS_C TMF_DNA_bd zf-RING_UBOX
Other DBs
NCBI-GeneID: 113049861
NCBI-ProteinID: XP_026068333
Ensembl: ENSCARG00000029367
UniProt: A0A6P6K7G7
LinkDB
Position
30:complement(28218323..28280350)
AA seq 537 aa
MMISTAGTVGKWKAMARPSLPSSLDSTLPGISREVLSVSMEPKYQCQQCKEILRKPFQAQ
CGHRFCVFCFKQLTSLGPIPCEACRAEGIFEEATSMLNIAVAFPDNAARREIDSLPAKCP
NDGCSWSGTLKEYEGQHEGRCDFERVKCEACQALILVSEKDRHNERECEARTLNCKYCKV
TFIFKEIKAHDEICQKFPMQCKDCGKKKIPREKFQEHIKSCAKSKSACQFSEIGCRAVVD
SGKQQEHEQTSMTEHLRLMLAVLSSVRQRAEGTGEWQEDSGLGLYRGPEDASPLGAHAAG
HNAGRGGGPGVQQKVTALENIVCVLNREVERSALTLEALSRQHRLDQEKIESLSNKVRQL
ERTLTMRDLQLAESEQSLRELQFCTYDGVFIWKIADFSRRRQDAVGGRAPAMFSPAFYSS
KYGYKMCLRLYLNGDGTGRGTHLSLFFVVMRGKYDALLKWPFSQKVTLMLLDQNNREHII
DAFRPDVSSTSFQRPISEMNIASGCPLFCPLAKLAGKSSYLRDDTIFIKAIVDLTGL
NT seq 1614 nt   +upstreamnt  +downstreamnt
atgatgatcagcactgctggcactgtgggtaaatggaaggcaatggcacgtccatcttta
ccttcttcattggactccacattacctgggatatctcgagaagtgctgtctgtgtccatg
gaaccaaaatatcaatgtcagcagtgcaaagaaattcttaggaaacctttccaagcacag
tgtggacatcgcttctgtgtgttctgtttcaaacaactcaccagcttggggcccatacca
tgcgaagcctgtcgtgctgagggtatatttgaagaggcaacatctatgctcaatattgca
gtggcatttcctgataatgctgcacgaagggaaattgatagcttgccagccaaatgccca
aatgatggatgtagttggtctggaacactgaaagagtatgagggtcaacatgaaggtcgt
tgtgactttgaacgtgtcaaatgtgaagcatgtcaagcactcatcttggtcagtgagaaa
gaccgccacaatgagcgggaatgcgaggccagaaccctgaactgcaaatactgcaaggtc
acattcatcttcaaagaaattaaggcacatgatgaaatatgtcagaaattccccatgcaa
tgcaaagactgtggtaaaaagaaaatccccagagagaagtttcaagagcacatcaagtct
tgtgcaaagtctaagtcagcatgccagttcagtgaaattggctgcagggcggtggttgac
agtggtaagcagcaggagcatgagcagaccagcatgacggaacatttgcgtctcatgcta
gccgtgctgtcctctgtgcgccagcgggcagaggggacaggagagtggcaggaagattct
ggactgggattgtatcgtggacctgaagatgcatctccattgggggctcatgctgctggc
cataatgcaggaagaggaggcggtcctggtgtacagcagaaagtcacagcattggagaac
atagtgtgtgtgttgaacagggaggtggagcgatcggccctcaccctggaggcactatcc
cgtcaacatcggttagaccaggaaaagatagaaagcttgtcaaacaaggtgcgacagcta
gaacggactttaaccatgcgagatctgcagttagcagaatctgaacagtccttgcgggag
ctgcagttttgtacatacgatggagttttcatttggaaaattgcagacttctctcgtcgc
agacaagacgcagtggggggccgggcacctgccatgttctcacctgcgttctactccagt
aaatatgggtataagatgtgtctgagactttacctgaatggtgacggcacaggccggggc
actcatctgtctctattttttgtggtcatgaggggcaaatatgatgccttgctgaagtgg
ccctttagccagaaggtgacattgatgttgttggaccagaacaacagagagcacatcatt
gatgcctttaggcctgacgtgagctccacatccttccagagacccatcagtgagatgaac
atagccagtggttgtcctctcttctgccctctagccaagctggcaggcaaaagctcatat
ctgagagatgacaccatatttattaaagccatagttgacctcactggcttataa

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