KEGG   Carassius auratus (goldfish): 113050325
Entry
113050325         CDS       T07313                                 
Name
(RefSeq) TAR DNA-binding protein 43-like
  KO
K23600  TAR DNA-binding protein 43
Organism
caua  Carassius auratus (goldfish)
Pathway
caua03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:caua00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    113050325
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:caua03019]
    113050325
Messenger RNA biogenesis [BR:caua03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Negative regulators of mRNA 3' end processing
     113050325
SSDB
Motif
Pfam: TDP-43_C TDP-43_N RRM_1 RRM_7 RRM_PARP14_3 RL
Other DBs
NCBI-GeneID: 113050325
NCBI-ProteinID: XP_026068963
Ensembl: ENSCARG00000046951
UniProt: A0A6P6K9A5
LinkDB
Position
31:5868266..5875668
AA seq 406 aa
MAEMYIRVAEEENEEPMEIPSEDDGTVLLSTVAAQFPGACGLRYRSPVSQCMRGVRLVEG
VLHAPENGWGNLVYVVNYPKETVLPDNKRKMDEIDASSATKIKRGDQKTSDLIVLGLPWK
TTEQDLKDYFSTFGDVIMVQVKRDVKTGNSKGFGFVRFAEWETQGKVMSQRHMIDGRWCD
CKLPNSKQGPDEPMRSRKVFVGRCTEDITADELRQFFMQYGEVTDVFIPKPFRAFAFVTF
ADDQVAASLCGEDLIIKGVSVHISNAEPKHNNPRQMMERAGRFGNGFGGQGFGGNRSSMG
GSSNSMGNLSNFNLNPAMMAAAQAALQSSWGMMGMLAQQGQPATAGTSTSGASSTRDQPQ
TYSSGNSNYGSSSAALGWGSGSNSSGSGFNSSFGSSMDSKSSGWGM
NT seq 1221 nt   +upstreamnt  +downstreamnt
atggccgagatgtacattcgtgtcgcggaggaggagaacgaggagccgatggagatccct
tcagaggacgacggcactgtgctgctgtccacggtggccgctcagtttccaggagcttgt
ggcctgcgttaccggagccctgtgtcccagtgcatgagaggagttcgactggtggaagga
gtcctgcacgcccccgagaatggctggggaaacctggtctatgtggtcaattatcctaaa
gaaacggttctgccggataataagaggaagatggatgagattgatgcttcatctgcaaca
aagatcaagagaggagatcagaagacttcagatctgattgtgctgggtctgccatggaaa
actacagaacaagacttaaaagactatttcagtacatttggggatgtcatcatggtgcag
gtcaagcgggatgtgaagacgggaaattcgaaaggatttgggttcgtgaggtttgcagag
tgggagactcagggtaaggtgatgtcacagcggcacatgattgacggcaggtggtgtgac
tgcaaacttcccaactcgaagcaaggtccagatgagccaatgaggagcaggaaagtgttc
gtgggccgttgcacagaggacataaccgctgatgagctccgtcagttcttcatgcagtat
ggggaggtcacagatgttttcattcctaaacccttcagagcattcgctttcgtcaccttt
gcagatgaccaggttgccgcctctctttgcggagaagatctgatcatcaagggcgtcagc
gtgcatatctccaatgctgagccaaaacacaacaaccctaggcagatgatggagcgggct
gggcgctttgggaatgggtttggaggtcagggtttcggaggcaaccgaagcagcatgggg
ggtagctccaacagcatgggaaatttaagcaatttcaacctcaatccagccatgatggct
gccgcccaggctgctctgcagagcagctggggtatgatgggaatgttagcacagcagggt
cagccagcaacagctggcacaagcacaagcggcgcaagttccactcgggaccagccccaa
acatacagctcgggcaacagcaactacggcagcagctcggccgctctcggctggggctcc
ggctctaactctagtggtagtgggtttaactccagctttggctctagtatggattcaaag
tcgtcagggtggggtatgtaa

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